Hg_chrom7_TN10mRNA_14729
Organism: Heterodera glycines Gene Locus: chr7:8222865-8227626 Feature type: polypeptideProtein Sequence
Length: 442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.526 | 1.21 | 1.44 | 0.624 | 1.018 | 0.928 | 0.404 | 1.697 | 1.006 | 1.315 | 0.96 | 2.396 | 1.697 | 0.87 | 1.2 | 0.743 | 0.779 | 0.651 | 1.914 | 1.797 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13898
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.095
|
0.934
|
0.008
|
0.204
|
0.034
|
0.024
|
0.067
|
0.036
|
0.021
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011632
|
1.000
|
1.000
|
Hsc_gene_12298.t1
|
Hsc_gene_12298.t1
|
— |
Q54UT2.2 Deoxyguanosine kinase [Dictyostelium discoideum]
|
KAI1722697.1 deoxynucleoside kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.799|GO:0009987_0.626|GO:0005575_0.617|GO:0110165_0.615|GO:0005622_0.575|GO:0003674_0.537|GO:0005737_0.535|GO:0016020_0.510|GO:0043226_0.502
|
IPR027417+78-301_78-337+|IPR031314+81-286+|IPR050566+56-288+
|
— |
PF01712+81-286+Deoxynucleoside_kinase
|
— |
PTHR10513+56-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-442
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
52886.280
|
6.449
|
-0.500
|
29.638
|
18.100
|
48.416
|
51.584
|
15.611
|
14.027
|
41.629
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
2661.242
|
2278.025
|
2763.287
|
2127.529
|
2911.470
|
3051.739
|
4040.726
|
2694.508
|
2202.561
|
2540.782
|
2395.830
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.236
|
-0.269
|
0.421
|
— |
0.416
|
-0.286
|
0.728
|
— | — | — | — | — |
No JSON data available for plots.