Hg_chrom7_TN10mRNA_14731
Organism: Heterodera glycines Gene Locus: chr7:8233599-8235435 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 0.298 | 0.855 | 0.737 | 0.855 | 1.534 | 1.323 | 1.496 | 1.14 | 0.635 | 0.648 | 2.765 | 0.831 | 1.808 | 1.395 | 0.855 | 0.35 | 1.489 | 0.0 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13900
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.713
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.631
|
0.265
|
0.055
|
0.509
|
0.091
|
0.096
|
0.075
|
0.030
|
0.094
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004648
|
2.000
|
1.000
|
Hsc_gene_2131.t1
|
Hsc_gene_2131.t1
|
— |
P48152.1 Small ribosomal subunit protein uS3 [Caenorhabditis elegans]
|
KAI1733177.1 KH domain-containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0006412
|
GO:0005575_0.892|GO:0110165_0.883|GO:0005622_0.792|GO:0003674_0.714|GO:0043226_0.705|GO:0043229_0.686|GO:0008150_0.620|GO:0005737_0.606|GO:0016020_0.599|GO:0005488_0.551|GO:0009987_0.544|GO:0043228_0.533|GO:0043232_0.533|GO:0043227_0.530|GO:0043231_0.510
|
IPR001351+84-166+|IPR004000+8-47+|IPR018280+125-161+|IPR036419+71-209_72-170+|IPR043129+8-52+
|
— |
PF00022+8-47+Actin|PF00189+84-166+Ribosomal_protein_S3,_C-terminal_domain
|
G3DSA:3.30.1140.32:FF:000004+71-206+40S_ribosomal_protein_S3
|
PTHR11760+53-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
162-234
|
1.000
|
1-161
|
9cai_AD
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
25256.100
|
8.352
|
6.500
|
23.932
|
8.547
|
39.316
|
60.684
|
14.103
|
9.829
|
54.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
755.232
|
1776.086
|
1136.359
|
1038.432
|
985.317
|
753.825
|
915.741
|
746.504
|
274.356
|
341.274
|
312.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.874
|
-0.912
|
— |
-0.108
|
-0.371
|
0.291
|
— |
0.437
|
— | — | — | — | — |
No JSON data available for plots.