Hg_chrom7_TN10mRNA_14733
Organism: Heterodera glycines Gene Locus: chr7:8239911-8243278 Feature type: polypeptideProtein Sequence
Length: 432
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.942 | 1.292 | 0.884 | 0.399 | 1.505 | 1.781 | 0.772 | 0.694 | 1.132 | 1.095 | 1.333 | 0.953 | 1.993 | 0.668 | 0.85 | 0.86 | 0.835 | 0.666 | 0.178 | 0.681 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13902
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.946
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
FKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.379
|
0.112
|
0.004
|
0.508
|
0.202
|
0.179
|
0.086
|
0.013
|
0.157
|
0.384
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000915
|
1.000
|
5.000
|
Hsc_gene_12300.t1;Hsc_gene_12300.t2;Hsc_gene_402.t1;Hsc_gene_402.t2;Hsc_gene_422.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
CAD8181866
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.942|GO:0005575_0.928|GO:0110165_0.928|GO:0009987_0.894|GO:0005622_0.877|GO:0016020_0.864|GO:0043226_0.838|GO:0043229_0.826|GO:0051179_0.808|GO:0065007_0.805|GO:0050789_0.799|GO:0005737_0.797|GO:0006810_0.793|GO:0051234_0.793|GO:0043227_0.782|GO:0050794_0.777|GO:0008152_0.767|GO:0071840_0.764|GO:0032501_0.755|GO:0016043_0.753|GO:0044238_0.753|GO:0032502_0.746|GO:0048856_0.746|GO:0043231_0.745|GO:0043170_0.738|GO:0051641_0.729|GO:0048518_0.723|GO:0048519_0.723|GO:0019222_0.720|GO:0006996_0.717|GO:0019538_0.716|GO:0048522_0.716|GO:0051649_0.716|GO:0030154_0.713|GO:0048869_0.713|GO:0080090_0.711|GO:0048523_0.710|GO:0060255_0.710|GO:0048468_0.708|GO:0071705_0.704|GO:0033036_0.703|GO:0046907_0.703|GO:0070727_0.703|GO:0008104_0.701|GO:0009056_0.701|GO:0044085_0.701|GO:0009893_0.698|GO:0022414_0.698|GO:0032879_0.698|GO:0022607_0.696|GO:0045184_0.693|GO:0010604_0.692|GO:0009653_0.691|GO:0051049_0.691|GO:0015031_0.690|GO:0042592_0.690|GO:0007010_0.689|GO:0003006_0.688|GO:0009057_0.688|GO:0019953_0.687|GO:0009888_0.686|GO:0009894_0.684|GO:0051246_0.684|GO:0006886_0.683|GO:0032880_0.683|GO:0060341_0.683|GO:0006508_0.681|GO:0048646_0.681|GO:0030163_0.680|GO:0048609_0.680|GO:0007155_0.679|GO:0007276_0.679|GO:0060429_0.679|GO:0022412_0.677|GO:0045229_0.677|GO:0007281_0.676|GO:0007610_0.676|GO:0030855_0.676|GO:0048871_0.676|GO:0098609_0.676|GO:1903829_0.676|GO:0009896_0.675|GO:0030155_0.675|GO:0032386_0.675|GO:0042176_0.675|GO:0051603_0.675|GO:0070201_0.675|GO:0002064_0.674|GO:0007292_0.674|GO:0010498_0.674|GO:0051050_0.674|GO:0051247_0.674|GO:0043632_0.673|GO:0051223_0.673|GO:0006511_0.670|GO:0006611_0.670|GO:0006913_0.670|GO:0007162_0.670|GO:0007299_0.670|GO:0007306_0.670|GO:0007631_0.670|GO:0010927_0.670|GO:0019941_0.670|GO:0030162_0.670|GO:0030536_0.670|GO:0030537_0.670|GO:0030707_0.670|GO:0032388_0.670|GO:0032434_0.670|GO:0032436_0.670|GO:0032989_0.670|GO:0033157_0.670|GO:0043161_0.670|GO:0045732_0.670|GO:0045862_0.670|GO:0046822_0.670|GO:0046824_0.670|GO:0046825_0.670|GO:0046827_0.670|GO:0046843_0.670|GO:0048477_0.670|GO:0051168_0.670|GO:0051169_0.670|GO:0051222_0.670|GO:0060249_0.670|GO:0060250_0.670|GO:0061136_0.670|GO:0090136_0.670|GO:0090316_0.670|GO:1901800_0.670|GO:1903050_0.670|GO:1903052_0.670|GO:1904951_0.670|GO:2000058_0.670|GO:2000060_0.670|GO:0032991_0.666|GO:0005634_0.620|GO:1902494_0.572|GO:0140535_0.554|GO:1990234_0.551|GO:0000151_0.540|GO:0034657_0.540
|
IPR003877+302-421+|IPR013320+252-423+|IPR043136+235-432+|IPR044736+283-420+
|
— |
PF00622+302-421+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-57
|
1.000
|
58-432
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
48736.030
|
6.280
|
-1.000
|
28.241
|
11.111
|
51.852
|
48.148
|
14.352
|
13.889
|
45.139
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
magenta
|
588.703
|
207.257
|
335.002
|
307.071
|
583.286
|
544.514
|
750.293
|
473.931
|
28.847
|
1353.434
|
785.754
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.460
|
0.430
|
— |
0.895
|
— |
0.471
|
-0.308
|
0.805
|
— | — | — | — | — |
No JSON data available for plots.