SCN Proteipedia

Hg_chrom7_TN10mRNA_14734

Organism: Heterodera glycines Gene Locus: chr7:8244584-8249244 Feature type: polypeptide

Protein Sequence

Length: 578

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.724	1.408	1.29	0.656	0.779	2.307	0.577	1.99	1.0	1.333	0.498	0.916	1.057	0.865	1.306	1.013	0.624	1.127	0.799	0.865	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13903	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.985

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	RRLLFQLAKQANRRRVQ	—	—	—	—	—	—	0.000	—	—	0.493	0.289	0.011	0.578	0.131	0.124	0.129	0.029	0.085	0.047

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011634	1.000	1.000	Hsc_gene_12303.t1	Hsc_gene_12303.t1	—	G5EFL0.1 Poly(A) RNA polymerase gld-4 [Caenorhabditis elegans]	KAF7637417.1 NTP_transf_2 domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:1990817	GO:0008150_0.973\|GO:0003674_0.865\|GO:0005575_0.837\|GO:0110165_0.833\|GO:0009987_0.794\|GO:0065007_0.788\|GO:0008152_0.779\|GO:0043170_0.779\|GO:0050789_0.778\|GO:0050794_0.767\|GO:0005622_0.737\|GO:0044238_0.729\|GO:0006139_0.689\|GO:0090304_0.678\|GO:0016070_0.676\|GO:0016020_0.669\|GO:0003824_0.662\|GO:0016740_0.651\|GO:0043226_0.647\|GO:0048518_0.637\|GO:0043229_0.634\|GO:0016772_0.632\|GO:0016779_0.619\|GO:0019222_0.578\|GO:0005488_0.577\|GO:0031323_0.566\|GO:0044237_0.566\|GO:0048519_0.563\|GO:0009056_0.562\|GO:0009057_0.560\|GO:0060255_0.552\|GO:0009058_0.547\|GO:0048523_0.546\|GO:0044249_0.544\|GO:0009059_0.541\|GO:0005737_0.539\|GO:0043227_0.539\|GO:0043231_0.538\|GO:0010467_0.537\|GO:0034655_0.537\|GO:0141188_0.537\|GO:0006401_0.536\|GO:0009889_0.532\|GO:0031326_0.532\|GO:0010556_0.528\|GO:0010468_0.521\|GO:0080090_0.505	IPR002058+367-427+\|IPR043519+163-287_182-289+\|IPR045862+39-518+	—	PF03828+367-427+Cid1_family_poly_A_polymerase\|PF22600+169-285+Poly(A)_RNA_polymerase,_mitochondrial-like,_central_palm_domain	—	PTHR23092+39-518+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-159;510-578	1.000	160-509	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.562	65822.880	6.465	-0.500	25.433	11.765	51.384	48.616	13.668	11.765	48.962

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	darkorange	598.790	730.223	729.350	697.079	884.765	833.127	1356.634	638.990	282.483	206.530	239.082

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.231	-0.204	—	0.312	—	0.714	-0.485	1.227	—	—	—	—	—

No JSON data available for plots.

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