Hg_chrom7_TN10mRNA_14735
Organism: Heterodera glycines Gene Locus: chr7:8250498-8254701 Feature type: polypeptideProtein Sequence
Length: 463
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.929 | 1.406 | 0.942 | 1.192 | 0.864 | 0.775 | 0.797 | 1.512 | 1.248 | 0.992 | 0.72 | 1.016 | 0.96 | 0.748 | 1.058 | 1.635 | 0.85 | 1.014 | 0.665 | 0.953 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13904
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.453
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.469
|
0.131
|
0.021
|
0.526
|
0.153
|
0.096
|
0.206
|
0.097
|
0.203
|
0.256
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011635
|
1.000
|
1.000
|
Hsc_gene_12304.t1
|
Hsc_gene_12304.t1
|
— |
Q94420.2 Protein maternal effect lethal 26 [Caenorhabditis elegans]
|
KAH7727568.1 BTB/POZ domain-containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.913|GO:0005575_0.868|GO:0110165_0.837|GO:0005622_0.716|GO:0009987_0.660|GO:0016020_0.636|GO:0003674_0.626|GO:0043226_0.609|GO:0043229_0.598|GO:0008152_0.576|GO:0005488_0.555|GO:0044238_0.540|GO:0065007_0.529|GO:0043170_0.523|GO:0005515_0.512|GO:0050789_0.510
|
IPR000210+259-354_263-322_263-352+|IPR002083+35-154_37-138+|IPR008974+35-157+|IPR011333+163-382_263-352+
|
SM00061+37-138+|SM00225+259-354+
|
PF00651+263-352+BTB/POZ_domain
|
G3DSA:3.30.710.10:FF:000159+257-351+Speckle-type_POZ_protein_B
|
PTHR24413+15-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-463
|
8dwu_I
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
50654.000
|
7.091
|
5.000
|
23.326
|
10.583
|
49.028
|
50.972
|
12.959
|
10.367
|
56.587
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
627.905
|
761.592
|
610.827
|
512.092
|
661.255
|
813.847
|
1475.447
|
500.151
|
458.762
|
402.310
|
426.504
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.547
|
-0.710
|
-0.146
|
0.338
|
0.314
|
0.868
|
-0.801
|
1.700
|
— | — | — | — | — |
No JSON data available for plots.