Hg_chrom7_TN10mRNA_14737
Organism: Heterodera glycines Gene Locus: chr7:8259439-8261659 Feature type: polypeptideProtein Sequence
Length: 208
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.342 | 1.118 | 0.612 | 1.989 | 0.401 | 3.452 | 1.087 | 0.481 | 0.855 | 0.975 | 0.219 | 2.828 | 1.736 | 1.202 | 0.883 | 0.481 | 0.946 | 0.437 | 0.37 | 0.566 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13906
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
— | — | — | — | — | — | — |
0.884
|
0.339
|
0.000
|
— |
0.423
|
0.253
|
0.013
|
0.246
|
0.077
|
0.049
|
0.082
|
0.013
|
0.154
|
0.916
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011637
|
1.000
|
1.000
|
Hsc_gene_12306.t1
|
Hsc_gene_12306.t1
|
— | — |
KAI1701681.1 shK domain-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+48-78_84-124_84-125+
|
SM00254+84-125+
|
PF01549+48-78_84-124+ShK_domain-like
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
162-208
|
1.000
|
1-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
22636.870
|
6.943
|
1.000
|
12.500
|
9.615
|
39.904
|
60.096
|
6.731
|
5.769
|
52.885
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
59.938
|
66.044
|
85.414
|
15.336
|
23.901
|
42.120
|
14.009
|
61.955
|
90.856
|
78.294
|
83.677
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.244
|
-2.372
|
— |
0.829
|
-1.576
|
— |
-2.001
|
— | — | — | — | — |