SCN Proteipedia

Hg_chrom7_TN10mRNA_14738

Organism: Heterodera glycines Gene Locus: chr7:8268942-8277530 Feature type: polypeptide

Protein Sequence

Length: 583

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.957	1.356	1.123	0.769	1.001	1.363	0.592	1.201	1.296	0.834	1.092	0.807	0.81	0.891	1.435	1.201	0.928	1.014	0.66	0.605	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13907	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.404

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|cell_membrane	—	KKRNSSTASKKKMRL	—	—	—	—	—	—	0.000	—	—	0.310	0.124	0.028	0.571	0.111	0.343	0.361	0.050	0.634	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011638	1.000	1.000	Hsc_gene_12308.t1	Hsc_gene_12308.t1	—	O16118.1 Guanine nucleotide-binding protein G(s) subunit alpha [Homarus americanus]	KAI3413980.1 G_alpha protein [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525\|GO:0007165\|GO:0007186\|GO:0019001\|GO:0031683	GO:0005575_0.932\|GO:0110165_0.932\|GO:0008150_0.927\|GO:0016020_0.836\|GO:0065007_0.822\|GO:0009987_0.807\|GO:0050896_0.785\|GO:0050789_0.784\|GO:0050794_0.774\|GO:0071944_0.757\|GO:0005886_0.742\|GO:0051716_0.709\|GO:0007154_0.691\|GO:0023052_0.683\|GO:0005622_0.672\|GO:0003674_0.655\|GO:0032501_0.622\|GO:0007165_0.617\|GO:0043226_0.528\|GO:0005488_0.503	IPR000367+269-283_284-299_454-469_518-532+\|IPR001019+209-582_218-582_219-572_237-583_239-577_240-255_374-396_403-420_425-453_471-480+\|IPR011025+266-388_272-387+\|IPR027417+238-581_240-571+	SM00275+218-582+	PF00503+219-572+G-protein_alpha_subunit	G3DSA:1.10.400.10:FF:000003+272-387+Guanine_nucleotide-binding_protein_G(S)_subunit_alpha\|G3DSA:3.40.50.300:FF:006178+371-583+Guanine_nucleotide-binding_protein_G(s)_subunit_alpha_isoforms_short	PTHR10218+209-582+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-238	1.000	239-583	8w8y_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.848	65099.400	8.961	19.000	28.816	8.233	54.031	45.969	16.638	12.178	52.830

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	943.315	1237.540	1627.891	714.815	274.959	976.799	862.362	1173.049	1179.545	667.065	886.699

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.167	-0.929	-1.079	-1.410	1.843	—	—	-0.303	—	—	—	—	—

No JSON data available for plots.

Back to Browser