Hg_chrom7_TN10mRNA_14739
Organism: Heterodera glycines Gene Locus: chr7:8280831-8282728 Feature type: polypeptideProtein Sequence
Length: 253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.379 | 0.643 | 0.862 | 1.09 | 0.922 | 3.04 | 0.847 | 2.767 | 0.791 | 0.801 | 0.539 | 0.93 | 1.098 | 0.76 | 1.775 | 0.96 | 0.324 | 0.779 | 0.608 | 0.465 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13908
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
— |
TRRRRLAARGGAAGANRRGAGFR
|
31-51
|
0.999
|
1-52
|
0.935
|
— | — |
0.035
|
— | — |
0.243
|
0.068
|
0.117
|
0.176
|
0.464
|
0.662
|
0.686
|
0.142
|
0.351
|
0.239
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011639
|
1.000
|
1.000
|
Hsc_gene_12309.t1
|
— | — | — |
KAI1722560.1 low-density lipoprotein receptor domain class A domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.928|GO:0110165_0.928|GO:0003674_0.865|GO:0005488_0.865|GO:0016020_0.848|GO:0005515_0.826|GO:0071944_0.793|GO:0005886_0.771|GO:0051219_0.650
|
IPR002172+84-122_84-123_85-121_90-121+|IPR023415+99-121+|IPR036055+82-125_83-121+
|
SM00192+84-123+
|
PF00057+85-121+Low-density_lipoprotein_receptor_domain_class_A
|
— |
PTHR46876+82-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
115-184
|
2.000
|
1-114;185-253
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
28326.660
|
8.516
|
12.000
|
28.063
|
11.858
|
51.383
|
48.617
|
17.787
|
10.277
|
47.431
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
347.507
|
460.365
|
1298.872
|
583.137
|
151.628
|
97.708
|
20.999
|
379.608
|
311.919
|
164.288
|
227.558
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.268
|
0.204
|
-1.047
|
-1.974
|
-0.620
|
-2.207
|
1.853
|
-4.033
|
— | — | — | — | — |
No JSON data available for plots.