Hg_chrom7_TN10mRNA_14746
Organism: Heterodera glycines Gene Locus: chr7:8303084-8303761 Feature type: polypeptideProtein Sequence
Length: 134
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.347 | 1.909 | 0.543 | 0.257 | 0.746 | 1.148 | 0.8 | 1.493 | 0.995 | 1.008 | 1.696 | 1.756 | 0.415 | 0.574 | 3.351 | 0.426 | 0.612 | 1.47 | 0.574 | 0.658 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13915
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.796
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRYCGEIGHAVSSKKRKQI,RKVKIVKKRTNRFTRHESDRYLRVKPNWRKPKGIDNRVRRRFKGQRRMPK
|
43-70
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.409
|
0.241
|
0.061
|
0.557
|
0.150
|
0.035
|
0.041
|
0.000
|
0.023
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011643
|
1.000
|
1.000
|
Hsc_gene_12314.t1
|
Hsc_gene_12314.t1
|
— |
Q962T1.1 Large ribosomal subunit protein eL32 [Spodoptera frugiperda]
|
KAI3407601.1 60S ribosomal protein L32 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.914|GO:0110165_0.907|GO:0005622_0.864|GO:0043226_0.840|GO:0043229_0.837|GO:0005737_0.712|GO:0043228_0.710|GO:0043232_0.710|GO:0016020_0.624|GO:0005840_0.616|GO:0032991_0.579|GO:1990904_0.579|GO:0003674_0.562|GO:0005829_0.555|GO:0022626_0.555|GO:0043227_0.535|GO:0008150_0.534|GO:0043231_0.530|GO:0044391_0.528
|
IPR001515+7-134_16-123_18-123+|IPR018263+19-39+|IPR036351+8-132+
|
SM01393+16-123+
|
PF01655+16-123+Ribosomal_protein_L32
|
— |
PTHR23413+7-134+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-71;110-134
|
1.000
|
72-109
|
7qws_e
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
15921.650
|
12.220
|
29.000
|
38.060
|
7.463
|
57.463
|
42.537
|
30.597
|
7.463
|
41.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
12326.025
|
3723.175
|
5277.782
|
10049.777
|
10944.171
|
8613.871
|
5675.144
|
3339.295
|
21556.118
|
19900.567
|
20610.089
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.274
|
1.296
|
1.038
|
0.091
|
-0.330
|
-0.592
|
-1.474
|
0.909
|
— | — | — | — | — |
No JSON data available for plots.