Hg_chrom7_TN10mRNA_14747
Organism: Heterodera glycines Gene Locus: chr7:8304004-8305403 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.197 | 1.14 | 1.604 | 0.676 | 1.389 | 0.88 | 0.233 | 0.735 | 1.634 | 1.524 | 0.743 | 2.018 | 1.362 | 0.471 | 1.501 | 0.63 | 0.563 | 0.817 | 0.0 | 1.153 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13916
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.298
|
0.131
|
0.005
|
0.576
|
0.197
|
0.410
|
0.363
|
0.022
|
0.153
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011644
|
1.000
|
1.000
|
Hsc_gene_12315.t1
|
Hsc_gene_12315.t1
|
— |
Q9NA26.1 Vacuolar protein sorting-associated protein 28 homolog [Caenorhabditis elegans]
|
KAI1724783.1 VPS28 protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000813|GO:0032509
|
GO:0005575_0.893|GO:0110165_0.889|GO:0005622_0.840|GO:0005737_0.795|GO:0008150_0.654|GO:0016020_0.638|GO:0009987_0.599|GO:0043226_0.599|GO:0043229_0.582|GO:0043227_0.561|GO:0043231_0.546|GO:0071944_0.521|GO:0008152_0.519|GO:0005886_0.508
|
IPR007143+1-202_4-202_25-201+|IPR017898+1-103+|IPR017899+107-202+|IPR037202+8-101+|IPR037206+103-203_110-201+|IPR038358+1-95+
|
— |
PF03997+25-201+VPS28_protein
|
G3DSA:1.20.120.1130:FF:000001+103-203+Vacuolar_protein_sorting-associated_protein_28_homolog
|
PTHR12937+4-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-204
|
6vme_Y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
23554.980
|
4.610
|
-8.500
|
30.882
|
10.294
|
47.059
|
52.941
|
13.725
|
17.157
|
43.627
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
1697.978
|
1642.116
|
1158.248
|
891.420
|
1014.665
|
1218.380
|
1716.362
|
2707.020
|
2276.725
|
1840.530
|
2027.471
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.733
|
-1.018
|
-0.269
|
0.154
|
0.279
|
0.505
|
1.045
|
-0.513
|
— | — | — | — | — |
No JSON data available for plots.