Hg_chrom7_TN10mRNA_14749
Organism: Heterodera glycines Gene Locus: chr7:8309065-8310093 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.607 | 0.708 | 1.186 | 0.0 | 1.304 | 2.007 | 0.932 | 0.652 | 2.029 | 1.586 | 1.449 | 0.767 | 0.725 | 0.502 | 1.065 | 0.373 | 1.497 | 0.791 | 0.0 | 0.384 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13918
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
4G06|MT0123311#tn8canujg17452t1
|
Hsc_gene_15525;Hsc_gene_15528
|
— | — |
15-Not_Clustered
|
0.938
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.715
|
0.160
|
0.017
|
0.459
|
0.216
|
0.048
|
0.028
|
0.007
|
0.145
|
0.341
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002199
|
3.000
|
1.000
|
Hsc_gene_20056.t3
|
Hsc_gene_12320.t1;Hsc_gene_12320.t2;Hsc_gene_14856.t1;Hsc_gene_14856.t2;Hsc_gene_15525.t1;Hsc_gene_15528.t1;Hsc_gene_18450.t1;Hsc_gene_18450.t2;Hsc_gene_20056.t1;Hsc_gene_20056.t2;Hsc_gene_20056.t3;Hsc_gene_21227.t1
|
F25B5.4;ZK1010.1
|
P0CH33.1 Polyubiquitin 11 [Arabidopsis thaliana]
|
PIO63634.1 ubiquitin family protein [Teladorsagia circumcincta]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.840|GO:0110165_0.832|GO:0005622_0.772|GO:0016020_0.693|GO:0043226_0.664|GO:0043229_0.661|GO:0005737_0.648|GO:0008150_0.624|GO:0043227_0.609|GO:0043231_0.577|GO:0003674_0.570
|
IPR000626+1-72_1-76_3-74_77-148_77-152_79-150_153-224_153-228_155-226+|IPR019954+27-52_103-128_179-204+|IPR019956+11-31_32-52_53-74+|IPR029071+1-76_76-152_153-229+|IPR050158+153-228+
|
SM00213+1-72_77-148_153-224+
|
PF00240+3-74_79-150_155-226+Ubiquitin_family
|
G3DSA:3.10.20.90:FF:000014+1-77_78-153+Ubiquitin-60S_ribosomal_L40_fusion|G3DSA:3.10.20.90:FF:000016+154-228+Polyubiquitin_3
|
PTHR10666+153-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-230
|
7eao_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
25774.670
|
8.405
|
2.500
|
30.435
|
5.217
|
53.043
|
46.957
|
16.087
|
14.348
|
42.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
3560.736
|
1638.868
|
1427.264
|
2011.560
|
2730.488
|
4166.401
|
3563.375
|
11906.721
|
3339.352
|
2781.954
|
3020.839
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.428
|
0.158
|
0.603
|
0.408
|
0.625
|
— |
1.410
|
-1.596
|
— | — | — | — | — |
No JSON data available for plots.