Hg_chrom7_TN10mRNA_14751
Organism: Heterodera glycines Gene Locus: chr7:8318969-8333988 Feature type: polypeptideProtein Sequence
Length: 681
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 1.332 | 0.881 | 0.557 | 0.661 | 2.41 | 0.647 | 1.762 | 0.881 | 1.25 | 0.445 | 1.9 | 0.938 | 0.932 | 1.558 | 1.405 | 0.698 | 1.001 | 0.678 | 0.605 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13920
|
— |
Hg_chrom7_TN10gene_13920
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
20-42
|
0.960
|
— | — | — | — |
0.000
|
— | — |
0.202
|
0.246
|
0.024
|
0.644
|
0.154
|
0.228
|
0.161
|
0.099
|
0.490
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011646
|
1.000
|
1.000
|
Hsc_gene_12327.t1
|
Hsc_gene_12327.t1
|
— |
Q6DN90.1 IQ motif and SEC7 domain-containing protein 1 [Homo sapiens]
|
KAH7731090.1 loner ISO1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0032012
|
GO:0005575_0.910|GO:0110165_0.905|GO:0005622_0.762|GO:0008150_0.715|GO:0009987_0.674|GO:0016020_0.666|GO:0043226_0.619|GO:0043229_0.546|GO:0065007_0.525|GO:0050789_0.523|GO:0050794_0.510
|
IPR000904+313-506_317-508_320-508_321-507+|IPR001849+540-650+|IPR011993+529-661+|IPR023394+396-522+|IPR033742+529-657+|IPR035999+318-508+
|
SM00222+317-508+|SM00233+540-650+
|
PF01369+321-507+Sec7_domain|PF16453+529-657+PH_domain
|
— |
PTHR10663+271-514+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-307;672-681
|
1.000
|
308-671
|
7vmb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
76662.580
|
9.177
|
24.000
|
22.907
|
9.838
|
52.129
|
47.871
|
14.097
|
8.811
|
49.780
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
greenyellow
|
2374.693
|
3149.180
|
1401.170
|
1184.839
|
1943.740
|
3468.090
|
1747.678
|
2829.044
|
1365.223
|
3468.960
|
2567.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.398
|
-1.547
|
-0.133
|
0.683
|
0.850
|
-0.980
|
-0.395
|
-0.555
|
— | — | — | — | — |
No JSON data available for plots.