Hg_chrom7_TN10mRNA_14755
Organism: Heterodera glycines Gene Locus: chr7:8337529-8340888 Feature type: polypeptideProtein Sequence
Length: 348
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 0.535 | 1.097 | 0.396 | 1.533 | 1.253 | 0.479 | 0.718 | 1.469 | 1.126 | 1.176 | 1.521 | 1.437 | 0.718 | 2.053 | 0.616 | 0.66 | 0.653 | 1.326 | 1.944 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13923
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
RRMARQYHPDRVKRE,RRQPYDEEAKLYMIRKNLK
|
— | — | — | — |
1-30
|
0.930
|
1.000
|
2.000
|
2.000
|
0.246
|
0.423
|
0.026
|
0.123
|
0.888
|
0.104
|
0.297
|
0.043
|
0.047
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002445
|
2.000
|
2.000
|
Hsc_gene_12325.t1;Hsc_gene_12325.t2
|
Hsc_gene_12325.t1;Hsc_gene_12325.t2;Hsc_gene_12325.t3
|
— |
Q17433.1 DnaJ homolog dnj-2 [Caenorhabditis elegans]
|
KAF7635738.1 J domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006457
|
GO:0005575_0.854|GO:0110165_0.852|GO:0005622_0.787|GO:0016020_0.711|GO:0005737_0.710|GO:0043226_0.671|GO:0043229_0.648|GO:0043227_0.618|GO:0008150_0.606|GO:0043231_0.606
|
IPR001623+42-104_43-101_43-112_44-109_64-79_84-104+|IPR018253+89-108+|IPR036869+29-136_39-127+|IPR044632+16-320+
|
SM00271+42-104+
|
PF00226+44-109+DnaJ_domain
|
G3DSA:1.10.287.110:FF:000036+29-136+dnaJ_homolog_subfamily_C_member_25
|
PTHR44176+16-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-348
|
2qsa_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
41959.130
|
9.359
|
11.500
|
34.483
|
14.943
|
50.000
|
50.000
|
19.253
|
15.230
|
35.632
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
2517.068
|
621.490
|
1522.593
|
1802.418
|
1836.566
|
2292.995
|
1311.068
|
1063.555
|
8439.687
|
763.400
|
4053.238
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.064
|
1.399
|
0.352
|
— |
0.336
|
-0.796
|
-1.207
|
0.442
|
3.346
|
-2.050
|
2.292
|
— | — |