Hg_chrom7_TN10mRNA_14756
Organism: Heterodera glycines Gene Locus: chr7:8342484-8344752 Feature type: polypeptideProtein Sequence
Length: 403
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.01 | 1.212 | 1.038 | 0.856 | 1.034 | 1.463 | 0.945 | 2.109 | 0.937 | 0.805 | 1.09 | 1.752 | 0.965 | 0.811 | 1.215 | 0.638 | 1.139 | 0.978 | 0.573 | 0.365 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13924
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.879
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KLERKHAKHVARK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.609
|
0.282
|
0.005
|
0.736
|
0.194
|
0.230
|
0.153
|
0.022
|
0.088
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011647
|
1.000
|
1.000
|
Hsc_gene_12324.t1
|
Hsc_gene_12324.t1
|
— |
O08623.1 Sequestosome-1 [Rattus norvegicus]
|
KAI1716058.1 zinc finger, ZZ type domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.948|GO:0005575_0.900|GO:0110165_0.898|GO:0009987_0.815|GO:0003674_0.804|GO:0005622_0.796|GO:0008152_0.724|GO:0016020_0.663|GO:0065007_0.642|GO:0043226_0.639|GO:0043229_0.631|GO:0005488_0.629|GO:0005737_0.598|GO:0050789_0.596|GO:0043227_0.589|GO:0050794_0.580|GO:0043231_0.579|GO:0044238_0.570|GO:0043170_0.564|GO:0050896_0.505|GO:0005515_0.504
|
IPR000433+141-184_142-192_144-184_147-173+|IPR043145+137-189+|IPR052260+43-371+
|
SM00291+141-184+
|
PF00569+144-184+Zinc_finger,_ZZ_type
|
G3DSA:3.30.60.90:FF:000016+136-188+Refractory_to_sigma_P
|
PTHR15090+43-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;219-403
|
1.000
|
19-218
|
6mj7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
44653.500
|
8.354
|
13.500
|
29.280
|
9.677
|
51.613
|
48.387
|
17.370
|
11.911
|
52.109
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
2326.656
|
7080.977
|
3048.738
|
1617.726
|
1875.726
|
3077.281
|
2530.553
|
3286.834
|
1370.023
|
707.415
|
991.390
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.443
|
-2.267
|
-0.807
|
0.182
|
0.729
|
-0.273
|
— | — | — | — | — | — | — |
No JSON data available for plots.