Hg_chrom7_TN10mRNA_14763
Organism: Heterodera glycines Gene Locus: chr7:8357565-8357860 Feature type: polypeptideProtein Sequence
Length: 79
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 0.294 | 0.921 | 1.746 | 0.633 | 0.325 | 1.507 | 1.899 | 1.406 | 0.342 | 0.959 | 2.234 | 0.352 | 0.974 | 2.067 | 0.904 | 1.66 | 0.575 | 0.0 | 1.489 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13930
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.802
|
0.072
|
0.013
|
0.508
|
0.208
|
0.097
|
0.034
|
0.002
|
0.156
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011650
|
1.000
|
1.000
|
Hsc_gene_12322.t1
|
Hsc_gene_12322.t1
|
— |
Q63871.2 DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Mus musculus]
|
KAI1732614.1 DNA directed RNA polymerase, 7 kDa subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003899|GO:0006351|GO:0008270
|
GO:0005575_0.845|GO:0110165_0.841|GO:0005622_0.732|GO:0008150_0.697|GO:0043226_0.688|GO:0043229_0.688|GO:0016020_0.684|GO:0043227_0.633|GO:0043231_0.628|GO:0009987_0.622|GO:0005634_0.556|GO:0031974_0.516|GO:0043233_0.516|GO:0070013_0.516|GO:0031981_0.505
|
IPR006591+36-79_38-69+|IPR029040+36-79+|IPR039747+35-79+
|
SM00659+36-79+
|
PF03604+38-69+DNA_directed_RNA_polymerase,_7_kDa_subunit
|
G3DSA:2.20.28.30:FF:000002+31-79+DNA-directed_RNA_polymerases_II,_IV_and_V_subunit_12
|
PTHR12056+35-79+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24
|
1.000
|
25-79
|
9mu9_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
8663.880
|
9.612
|
7.500
|
29.114
|
10.127
|
48.101
|
51.899
|
20.253
|
8.861
|
55.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
960.263
|
926.531
|
912.609
|
936.109
|
932.659
|
762.282
|
770.937
|
562.676
|
1598.263
|
826.028
|
1156.986
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.252
|
-0.122
|
0.146
|
— |
-0.276
|
— |
-0.543
|
0.597
|
— | — | — | — | — |
No JSON data available for plots.