Hg_chrom7_TN10mRNA_14764
Organism: Heterodera glycines Gene Locus: chr7:8358110-8360773 Feature type: polypeptideProtein Sequence
Length: 481
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.991 | 0.822 | 0.794 | 0.717 | 0.762 | 1.173 | 1.213 | 1.871 | 0.924 | 1.011 | 0.504 | 1.59 | 1.617 | 1.079 | 1.146 | 1.129 | 0.852 | 1.008 | 1.119 | 0.734 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13931
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRIR
|
— | — |
1-38
|
0.998
|
— | — |
0.000
|
— | — |
0.197
|
0.922
|
0.016
|
0.280
|
0.032
|
0.040
|
0.028
|
0.015
|
0.028
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011651
|
1.000
|
1.000
|
Hsc_gene_12321.t1
|
Hsc_gene_12321.t1
|
— |
Q6P798.1 RCC1 and BTB domain-containing protein 2 [Rattus norvegicus]
|
KAF7635767.1 Fe2OG dioxygenase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.792|GO:0005575_0.755|GO:0110165_0.748|GO:0009987_0.628|GO:0005622_0.627|GO:0016020_0.598|GO:0005737_0.575|GO:0003674_0.567|GO:0043226_0.560|GO:0043227_0.518
|
IPR000408+187-200_268-312_269-285_269-321_308-324_321-366_322-373_324-338_430-477_431-480+|IPR009091+30-386_185-479_387-480+|IPR053035+67-481+
|
— |
PF00415+268-312_321-366_430-477+Regulator_of_chromosome_condensation_(RCC1)_repeat
|
— |
PTHR46337+67-481+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-481
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
52567.580
|
7.534
|
9.000
|
21.622
|
13.514
|
42.827
|
57.173
|
12.682
|
8.940
|
54.054
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
701.496
|
555.274
|
506.288
|
653.962
|
778.065
|
565.574
|
1017.192
|
457.591
|
120.441
|
1278.483
|
782.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.364
|
— |
0.479
|
0.219
|
-0.446
|
0.857
|
-0.409
|
1.294
|
-3.544
|
— | — | — | — |
No JSON data available for plots.