Hg_chrom7_TN10mRNA_14766
Organism: Heterodera glycines Gene Locus: chr7:8363137-8365029 Feature type: polypeptideProtein Sequence
Length: 168
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.554 | 0.541 | 0.205 | 0.595 | 2.289 | 0.496 | 1.488 | 1.058 | 1.609 | 1.533 | 2.101 | 0.661 | 0.916 | 1.822 | 1.19 | 0.878 | 0.631 | 0.458 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13933
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRHHKKGALALKEIRKYQK,TKRPNPKRGIGYKELPPVKIAQKRHHKKGALALKEIR
|
1-35
|
0.978
|
17-49
|
0.946
|
— | — |
0.000
|
— | — |
0.790
|
0.265
|
0.033
|
0.545
|
0.034
|
0.017
|
0.038
|
0.004
|
0.061
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011652
|
1.000
|
1.000
|
Hsc_gene_12333.t1
|
Hsc_gene_12333.t1
|
— |
A2XHJ3.1 Histone H3.3 [Oryza sativa Indica Group]
|
KAF7635764.1 Histone domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.888|GO:0110165_0.888|GO:0005622_0.868|GO:0043226_0.833|GO:0043229_0.831|GO:0016020_0.768|GO:0043227_0.717|GO:0043231_0.713|GO:0008150_0.571|GO:0005634_0.541|GO:0009987_0.540|GO:0043228_0.524|GO:0043232_0.524
|
IPR000164+1-158_56-160_89-97+|IPR007125+39-156+|IPR009072+2-159_32-157+
|
SM00428+56-160+
|
PF00125+39-156+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000088+1-159+Histone_H3-like_centromeric_protein_CSE4
|
PTHR11426+1-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-61
|
1.000
|
62-168
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
19292.600
|
11.456
|
23.500
|
28.571
|
8.333
|
53.571
|
46.429
|
22.024
|
6.548
|
39.881
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
2697.595
|
3241.340
|
2428.787
|
2213.555
|
2122.479
|
2221.846
|
1756.977
|
3894.859
|
1922.493
|
3655.168
|
2912.593
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.645
|
-0.687
|
— |
-0.093
|
— |
-0.328
|
0.705
|
-1.005
|
— | — | — | — | — |
No JSON data available for plots.