SCN Proteipedia

Hg_chrom7_TN10mRNA_14769

Organism: Heterodera glycines Gene Locus: chr7:8381384-8390143 Feature type: polypeptide

Protein Sequence

Length: 759

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.272	1.042	0.91	0.5	0.812	0.743	0.69	1.054	0.937	1.193	0.838	1.008	1.537	1.039	1.56	1.129	0.886	1.038	1.013	0.62	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13936	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RKSK,RPRR	106-133	0.989	—	—	—	—	0.000	—	—	0.047	0.080	0.059	0.084	0.219	0.437	0.284	0.011	0.687	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002447	1.000	3.000	Hsc_gene_12338.t1;Hsc_gene_12338.t2;Hsc_gene_12338.t3	Hsc_gene_12338.t1;Hsc_gene_12338.t2;Hsc_gene_12338.t3;Hsc_gene_12339.t1	—	Q9XXD1.3 Probable voltage-gated potassium channel subunit kvs-4 [Caenorhabditis elegans]	KAI1733166.1 ion transport protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005249\|GO:0006811\|GO:0006813\|GO:0008076\|GO:0016020\|GO:0051260\|GO:0055085	GO:0008150_0.917\|GO:0005575_0.789\|GO:0110165_0.785\|GO:0009987_0.780\|GO:0051179_0.754\|GO:0006810_0.747\|GO:0051234_0.747\|GO:0003674_0.735\|GO:0016020_0.729\|GO:0071944_0.724\|GO:0005886_0.709\|GO:0055085_0.632\|GO:0006811_0.610\|GO:0034220_0.582\|GO:0005215_0.575\|GO:0022857_0.575\|GO:0006812_0.554\|GO:0030001_0.551\|GO:0015075_0.550\|GO:0015267_0.546\|GO:0022803_0.546\|GO:0005216_0.542\|GO:0098660_0.540\|GO:0098655_0.526\|GO:0098662_0.521\|GO:0006813_0.515\|GO:0008324_0.510\|GO:0015318_0.509	IPR003131+312-411+\|IPR003968+361-371_617-625_707-718+\|IPR003971+315-327_353-366_377-392_400-412_706-724+\|IPR005821+461-725+\|IPR011333+286-418_309-414+\|IPR027359+433-624+	—	PF00520+461-725+Ion_transport_protein\|PF02214+312-411+BTB/POZ_domain	G3DSA:1.20.120.350:FF:000070+433-624+K+_channel_tetramerization_domain_protein	PTHR11537+309-749+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-292;756-759	1.000	293-755	3kvt_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.869	84117.190	10.015	33.000	25.165	11.067	45.850	54.150	15.283	9.881	53.228

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	881.703	1204.844	2080.427	537.776	180.743	208.044	168.389	869.427	134.867	1787.683	1079.333

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.558	-1.301	-1.843	-1.606	—	—	1.962	-2.226	-3.849	—	-3.025	—	—

No JSON data available for plots.

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