Hg_chrom7_TN10mRNA_14770
Organism: Heterodera glycines Gene Locus: chr7:8390694-8401596 Feature type: polypeptideProtein Sequence
Length: 1,676
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.068 | 0.86 | 1.193 | 0.967 | 0.835 | 1.622 | 0.774 | 1.909 | 0.809 | 1.645 | 0.47 | 1.123 | 1.044 | 0.952 | 1.352 | 0.878 | 0.783 | 1.003 | 0.505 | 0.509 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13937
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.598
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
lysosome_vacuole
|
— |
RPRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.305
|
0.155
|
0.016
|
0.401
|
0.179
|
0.455
|
0.227
|
0.022
|
0.138
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004651
|
1.000
|
2.000
|
Hsc_gene_12340.t1;Hsc_gene_12340.t2
|
Hsc_gene_12340.t1;Hsc_gene_12340.t2
|
— |
Q0P5W1.1 Vacuolar protein sorting-associated protein 8 homolog [Mus musculus]
|
KAF7637591.1 Vps8 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006623
|
GO:0005575_0.911|GO:0110165_0.907|GO:0005622_0.818|GO:0016020_0.806|GO:0071944_0.754|GO:0043226_0.747|GO:0005886_0.731|GO:0043229_0.727|GO:0005737_0.723|GO:0008150_0.708|GO:0043227_0.692|GO:0043231_0.677|GO:0009987_0.654|GO:0005773_0.592|GO:0012505_0.589|GO:0031982_0.574|GO:0097708_0.557|GO:0031410_0.556|GO:0005768_0.545|GO:0071840_0.510|GO:0016043_0.506
|
IPR015943+169-496+|IPR025941+683-915+|IPR036322+181-388+|IPR045111+173-1576+
|
— |
PF12816+683-915+Golgi_CORVET_complex_core_vacuolar_protein_8
|
— |
PTHR12616+173-1576+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-95;1519-1676
|
1.000
|
96-1518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
185330.810
|
6.526
|
1.000
|
25.119
|
9.964
|
46.062
|
53.938
|
13.544
|
11.575
|
51.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1408.981
|
2737.025
|
1580.286
|
1371.913
|
1421.149
|
1431.158
|
2397.778
|
1124.377
|
874.070
|
984.858
|
937.378
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.022
|
-1.134
|
— | — | — |
0.754
|
-0.454
|
1.235
|
— | — | — | — | — |
No JSON data available for plots.