Hg_chrom7_TN10mRNA_14771
Organism: Heterodera glycines Gene Locus: chr7:8401773-8404257 Feature type: polypeptideProtein Sequence
Length: 373
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 0.811 | 0.731 | 0.74 | 1.028 | 0.894 | 0.989 | 1.206 | 1.966 | 1.159 | 0.691 | 1.735 | 0.894 | 1.083 | 1.04 | 0.919 | 0.791 | 1.706 | 0.206 | 0.631 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13938
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.317
|
0.114
|
0.042
|
0.666
|
0.391
|
0.286
|
0.504
|
0.151
|
0.088
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011655
|
1.000
|
1.000
|
Hsc_gene_12342.t1
|
Hsc_gene_12341.t1;Hsc_gene_12342.t1
|
— |
A3QMC8.1 Mannose-1-phosphate guanyltransferase beta [Caenorhabditis elegans]
|
KAF7635769.1 NTP_transferase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004475|GO:0005525|GO:0009058|GO:0009298|GO:0016740
|
GO:0008150_0.733|GO:0003674_0.700|GO:0005575_0.663|GO:0009987_0.661|GO:0110165_0.647|GO:0003824_0.600|GO:0008152_0.525|GO:0005622_0.503|GO:0044237_0.502|GO:0005737_0.501
|
IPR005835+2-230+|IPR011004+306-365+|IPR018357+269-297+|IPR029044+1-239_1-311+|IPR045233+1-233+|IPR050486+1-373+
|
— |
PF00483+2-230+Nucleotidyl_transferase
|
G3DSA:3.90.550.10:FF:000013+1-231+mannose-1-phosphate_guanyltransferase_beta
|
PTHR22572+1-373+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-373
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
40641.380
|
6.941
|
2.500
|
22.252
|
8.043
|
40.483
|
59.517
|
12.064
|
10.188
|
52.279
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
darkturquoise
|
1474.798
|
669.137
|
1027.188
|
792.733
|
776.553
|
3082.823
|
1817.682
|
1397.775
|
2657.341
|
872.778
|
1637.591
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.391
|
— |
-0.267
|
— |
2.003
|
-0.751
|
-1.243
|
0.520
|
— |
-1.571
|
— | — | — |
No JSON data available for plots.