Hg_chrom7_TN10mRNA_14772
Organism: Heterodera glycines Gene Locus: chr7:8405187-8408605 Feature type: polypeptideProtein Sequence
Length: 513
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.657 | 1.179 | 1.063 | 0.202 | 1.17 | 1.599 | 0.859 | 1.852 | 1.17 | 1.133 | 1.004 | 1.72 | 1.137 | 0.675 | 1.392 | 0.863 | 0.927 | 1.093 | 0.45 | 0.459 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13939
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
13-53
|
0.942
|
— | — |
0.000
|
— | — |
0.307
|
0.273
|
0.009
|
0.649
|
0.083
|
0.294
|
0.315
|
0.059
|
0.374
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011656
|
1.000
|
1.000
|
Hsc_gene_12343.t1
|
Hsc_gene_12343.t1
|
— |
P40797.2 Protein peanut [Drosophila melanogaster]
|
KAF7635729.1 Septin-type G domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005525
|
GO:0005575_0.906|GO:0110165_0.899|GO:0005622_0.820|GO:0008150_0.746|GO:0043226_0.724|GO:0043229_0.699|GO:0009987_0.676|GO:0016020_0.661|GO:0005737_0.640|GO:0071944_0.605|GO:0003674_0.602|GO:0043228_0.588|GO:0043232_0.588|GO:0005488_0.533|GO:0032991_0.531|GO:0005886_0.513|GO:0043227_0.513
|
IPR016491+7-488_54-378+|IPR027417+33-382_34-233+|IPR030379+53-380_54-241_292-382+
|
— |
PF00735+54-241_292-382+Septin
|
— |
PTHR18884+31-456+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;375-513
|
1.000
|
21-374
|
3t5d_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
57988.780
|
8.628
|
12.500
|
30.019
|
9.942
|
53.021
|
46.979
|
17.154
|
12.865
|
46.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkturquoise
|
1660.451
|
1625.109
|
783.267
|
1857.371
|
3320.478
|
2907.321
|
3821.202
|
2402.986
|
595.163
|
548.949
|
568.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.283
|
— |
1.355
|
0.806
|
— |
0.405
|
-0.381
|
0.813
|
— | — | — | — | — |
No JSON data available for plots.