Hg_chrom7_TN10mRNA_14773
Organism: Heterodera glycines Gene Locus: chr7:8409709-8410875 Feature type: polypeptideProtein Sequence
Length: 175
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.997 | 0.93 | 0.831 | 0.591 | 0.952 | 1.319 | 0.544 | 1.714 | 1.016 | 1.081 | 0.866 | 0.672 | 2.381 | 0.44 | 0.35 | 1.551 | 0.937 | 1.039 | 0.879 | 1.681 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13940
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-25
|
0.995
|
1.000
|
1.000
|
1.000
|
0.123
|
0.185
|
0.070
|
0.128
|
0.900
|
0.319
|
0.625
|
0.058
|
0.272
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011657
|
1.000
|
1.000
|
Hsc_gene_12344.t1
|
Hsc_gene_12344.t1
|
— | — |
AHB64350.1 translocon associated protein delta subunit [Pratylenchus goodeyi]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005783|GO:0016020
|
GO:0005575_0.914|GO:0110165_0.914|GO:0016020_0.852|GO:0071944_0.813|GO:0005886_0.799|GO:0005622_0.797|GO:0005737_0.797|GO:0043226_0.765|GO:0043227_0.750|GO:0043229_0.748|GO:0043231_0.745|GO:0005773_0.706|GO:0012505_0.676|GO:0031090_0.632|GO:0032991_0.603|GO:0005783_0.596|GO:0098588_0.586|GO:0098796_0.574|GO:0031984_0.569|GO:0042175_0.562|GO:0098827_0.560|GO:0005789_0.559|GO:0140534_0.546|GO:0005784_0.540|GO:0005791_0.540|GO:0030867_0.540|GO:0071256_0.540
|
IPR008855+9-169_15-169+
|
— |
PF05404+15-169+Translocon-associated_protein,_delta_subunit_precursor_(TRAP-delta)
|
— |
PTHR12731+9-169+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-175
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
19794.270
|
5.901
|
-2.000
|
21.143
|
18.857
|
46.857
|
53.143
|
10.857
|
10.286
|
49.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
3280.540
|
807.873
|
1479.864
|
3163.207
|
4094.036
|
4291.356
|
2063.897
|
1425.843
|
4942.095
|
4148.515
|
4488.620
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
1.832
|
1.204
|
0.340
|
— |
-1.048
|
-1.692
|
0.674
|
— | — | — | — | — |