Hg_chrom7_TN10mRNA_14774
Organism: Heterodera glycines Gene Locus: chr7:8410962-8412791 Feature type: polypeptideProtein Sequence
Length: 252
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 0.461 | 0.722 | 0.958 | 0.661 | 0.611 | 0.52 | 1.984 | 1.146 | 1.18 | 1.203 | 2.101 | 1.433 | 0.687 | 2.268 | 1.134 | 0.651 | 1.082 | 0.916 | 0.934 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13941
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
6-27
|
0.960
|
1-71
|
0.978
|
— | — |
0.000
|
— | — |
0.057
|
0.973
|
0.023
|
0.097
|
0.052
|
0.060
|
0.107
|
0.055
|
0.109
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011658
|
1.000
|
1.000
|
Hsc_gene_12345.t1
|
Hsc_gene_12345.t1
|
— | — |
NP_499555.1 DUF1279 domain-containing protein [Caenorhabditis elegans];CAB60503.2 DUF1279 domain-containing protein [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.887|GO:0110165_0.885|GO:0016020_0.830|GO:0005622_0.805|GO:0043226_0.772|GO:0043229_0.758|GO:0043227_0.726|GO:0043231_0.724|GO:0005737_0.709|GO:0005739_0.559
|
IPR009688+100-186+|IPR045866+64-197+
|
— |
PF06916+100-186+FAM210A/B-like_domain
|
— |
PTHR21377+64-197+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
229-252
|
1.000
|
1-228
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
29208.330
|
10.986
|
33.000
|
30.952
|
13.492
|
47.222
|
52.778
|
23.016
|
7.937
|
43.651
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
734.319
|
359.226
|
435.019
|
550.411
|
644.776
|
455.073
|
478.361
|
319.609
|
355.057
|
1730.426
|
1140.982
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.478
|
0.448
|
0.196
|
-0.488
|
— |
-0.615
|
0.724
|
-2.383
|
— | — | — | — |
No JSON data available for plots.