Hg_chrom7_TN10mRNA_14775
Organism: Heterodera glycines Gene Locus: chr7:8413043-8415596 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 0.681 | 1.188 | 0.699 | 1.089 | 1.271 | 0.778 | 2.365 | 0.601 | 1.37 | 0.58 | 1.192 | 1.376 | 0.736 | 1.609 | 0.837 | 0.849 | 1.16 | 0.866 | 0.927 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13942
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.187
|
0.679
|
0.017
|
0.565
|
0.144
|
0.155
|
0.136
|
0.256
|
0.064
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011659
|
1.000
|
1.000
|
Hsc_gene_12346.t1
|
Hsc_gene_12346.t1
|
— |
O76463.1 Nitrilase and fragile histidine triad fusion protein NitFhit [Caenorhabditis elegans]
|
KAI3421103.1 Nitrilase and fragile histidine triad fusion protein NitFhit [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0016811
|
GO:0008150_0.761|GO:0005575_0.746|GO:0110165_0.741|GO:0003674_0.672|GO:0005622_0.664|GO:0008152_0.645|GO:0016020_0.584|GO:0003824_0.576|GO:0005737_0.567|GO:0043226_0.547|GO:0043229_0.538|GO:0043227_0.508|GO:0043231_0.501
|
IPR001110+160-180+|IPR003010+6-259_7-266+|IPR011146+294-402_309-396+|IPR019808+376-394+|IPR036265+294-437_307-437+|IPR036526+1-286_3-275+|IPR045254+7-276+
|
— |
PF00795+7-266+Carbon-nitrogen_hydrolase|PF01230+309-396+HIT_domain
|
G3DSA:3.30.428.10:FF:000011+294-438+Fragile_histidine_triad|G3DSA:3.60.110.10:FF:000005+1-282+nitrilase_homolog_1_isoform_X1
|
PTHR23088+3-281+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
404-444
|
1.000
|
1-403
|
6fit_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
50551.180
|
6.866
|
4.500
|
29.505
|
13.964
|
48.423
|
51.577
|
16.441
|
13.063
|
47.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1720.642
|
904.598
|
1412.153
|
1343.140
|
1705.321
|
1833.554
|
2196.614
|
2490.590
|
1514.301
|
1934.846
|
1754.613
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.413
|
0.433
|
— |
0.313
|
— |
0.271
|
0.336
|
— | — | — | — | — | — |
No JSON data available for plots.