Hg_chrom7_TN10mRNA_14776
Organism: Heterodera glycines Gene Locus: chr7:8415739-8420544 Feature type: polypeptideProtein Sequence
Length: 796
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.979 | 0.526 | 0.937 | 0.693 | 1.926 | 1.933 | 0.763 | 1.382 | 0.81 | 0.9 | 0.818 | 0.961 | 0.628 | 0.966 | 1.051 | 1.167 | 0.927 | 0.952 | 0.676 | 0.924 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13943
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_12347
|
— |
19-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
KPRK
|
— | — | — | — |
1-21
|
0.960
|
0.997
|
0.000
|
0.000
|
0.263
|
0.274
|
0.050
|
0.294
|
0.608
|
0.201
|
0.386
|
0.243
|
0.150
|
0.586
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011660
|
1.000
|
1.000
|
Hsc_gene_12347.t1
|
Hsc_gene_12347.t1
|
— |
Q96DZ1.1 Endoplasmic reticulum lectin 1 [Homo sapiens]
|
KAI1731127.1 glucosidase II beta subunit-like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030968|GO:0036503
|
GO:0008150_0.957|GO:0005575_0.937|GO:0110165_0.929|GO:0009987_0.912|GO:0005622_0.843|GO:0016020_0.837|GO:0071944_0.823|GO:0005886_0.808|GO:0043226_0.783|GO:0043229_0.752|GO:0005737_0.741|GO:0043227_0.726|GO:0050896_0.703|GO:0043231_0.680|GO:0051716_0.674|GO:0051179_0.652|GO:0065007_0.651|GO:0008152_0.641|GO:0043170_0.641|GO:0050789_0.640|GO:0051234_0.633|GO:0044238_0.632|GO:0003674_0.629|GO:0005773_0.623|GO:0005488_0.620|GO:0006950_0.617|GO:0019538_0.616|GO:0050794_0.613|GO:0012505_0.612|GO:0051641_0.610|GO:0005515_0.606|GO:0042221_0.605|GO:0033036_0.582|GO:0033554_0.582|GO:0070727_0.582|GO:0008104_0.580|GO:0009056_0.578|GO:0009057_0.573|GO:1901698_0.570|GO:0006508_0.564|GO:0030163_0.564|GO:0045184_0.564|GO:0051603_0.558|GO:0005783_0.556|GO:0010498_0.556|GO:0034976_0.556|GO:0036503_0.552|GO:0048519_0.521|GO:0006810_0.513|GO:0031974_0.508|GO:0043233_0.508|GO:0070013_0.507|GO:0048523_0.506
|
IPR009011+175-296_247-300_460-585_533-589+|IPR012913+178-256_462-543+|IPR044865+176-302+|IPR045149+458-777+
|
— |
PF07915+178-256_462-543+Glucosidase_II_beta_subunit-like_protein
|
G3DSA:2.70.130.10:FF:000001+460-585+Endoplasmic_reticulum_lectin_1
|
PTHR15414+458-777+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
54-129;311-456;663-796
|
3.000
|
1-53;130-310;457-662
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
88679.170
|
4.634
|
-38.000
|
30.025
|
9.045
|
53.643
|
46.357
|
13.317
|
16.709
|
49.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
4201.120
|
3232.894
|
2541.949
|
2354.242
|
2938.194
|
3208.483
|
3911.783
|
2509.093
|
11528.480
|
1972.303
|
6067.807
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.576
|
-0.595
|
— |
0.288
|
— |
0.297
|
-0.458
|
0.783
|
2.448
|
-2.140
|
— | — | — |