SCN Proteipedia

Hg_chrom7_TN10mRNA_14780

Organism: Heterodera glycines Gene Locus: chr7:8428373-8430256 Feature type: polypeptide

Protein Sequence

Length: 299

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.622	1.244	1.277	0.346	0.836	1.286	0.836	1.505	1.041	1.672	0.912	1.377	2.323	0.836	0.819	0.86	1.042	0.608	0.772	0.492	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13947	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.812	0.181	0.008	0.585	0.057	0.159	0.095	0.002	0.063	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011661	1.000	1.000	Hsc_gene_12349.t1	Hsc_gene_12349.t1	—	Q17345.1 CCR4-NOT transcription complex subunit 7 [Caenorhabditis elegans]	KAI1733157.1 CAF1 family ribonuclease domain-containing protein [Ditylenchus destructor]	No	-0.080

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0004535\|GO:0030014	GO:0008150_0.864\|GO:0009987_0.807\|GO:0065007_0.759\|GO:0050789_0.746\|GO:0005575_0.726\|GO:0050794_0.726\|GO:0008152_0.721\|GO:0110165_0.721\|GO:0044238_0.700\|GO:0044237_0.698\|GO:0009058_0.685\|GO:0043170_0.683\|GO:0005622_0.675\|GO:0044249_0.669\|GO:0009059_0.658\|GO:0019222_0.654\|GO:0031323_0.650\|GO:0010467_0.647\|GO:0006139_0.645\|GO:0048519_0.645\|GO:0060255_0.644\|GO:0048523_0.637\|GO:0009889_0.635\|GO:0031326_0.633\|GO:0010556_0.631\|GO:0090304_0.631\|GO:0009056_0.629\|GO:0010468_0.628\|GO:0016070_0.625\|GO:0005737_0.622\|GO:0009057_0.613\|GO:0009892_0.612\|GO:0031324_0.608\|GO:0010605_0.606\|GO:0009890_0.603\|GO:0031327_0.603\|GO:0010558_0.602\|GO:0003674_0.601\|GO:0010629_0.599\|GO:0034655_0.598\|GO:0016071_0.597\|GO:0141188_0.597\|GO:0006401_0.596\|GO:0006402_0.594\|GO:0048518_0.580\|GO:0080090_0.563\|GO:0043226_0.558\|GO:0009893_0.553\|GO:0065008_0.544\|GO:0043229_0.543\|GO:0010604_0.540\|GO:0019219_0.535\|GO:0051252_0.535\|GO:0045935_0.525\|GO:0009894_0.523\|GO:0051254_0.523\|GO:0010608_0.516\|GO:0009896_0.515\|GO:0061013_0.513\|GO:1903311_0.513\|GO:0043487_0.510\|GO:0043488_0.510\|GO:0050779_0.510\|GO:0061014_0.510\|GO:0061157_0.510\|GO:1903313_0.510	IPR006941+23-134_165-254+\|IPR012337+13-270+\|IPR036397+8-284+\|IPR039637+20-283+	—	PF04857+23-134_165-254+CAF1_family_ribonuclease	—	PTHR10797+20-283+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	280-299	1.000	1-279	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.578	33863.580	6.230	-1.500	25.084	14.047	47.826	52.174	13.043	12.040	46.488

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	turquoise	1660.583	780.589	1000.841	1286.474	1809.618	1687.588	3900.607	1343.087	307.800	2605.900	1621.000

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.128	0.584	0.471	0.461	—	1.219	-0.436	1.681	-3.220	—	—	—	—

No JSON data available for plots.

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