Hg_chrom7_TN10mRNA_14781
Organism: Heterodera glycines Gene Locus: chr7:8430562-8431947 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 0.289 | 0.565 | 0.428 | 0.725 | 2.07 | 0.739 | 1.242 | 1.242 | 1.427 | 1.788 | 2.192 | 0.518 | 0.956 | 2.028 | 0.532 | 0.916 | 0.847 | 0.478 | 0.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13948
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.499
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRHHKKGALALKEIRKYQK,KELPPVKIQQKRHHKKGALALK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.633
|
0.248
|
0.040
|
0.496
|
0.044
|
0.021
|
0.061
|
0.002
|
0.135
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011662
|
1.000
|
1.000
|
Hsc_gene_12350.t1
|
Hsc_gene_12350.t1
|
— |
P15512.2 Histone H3.3 [Tetrahymena pyriformis]
|
KAF7635764.1 Histone domain-containing protein [Meloidogyne graminicola]
|
CAA2634492
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.885|GO:0110165_0.875|GO:0005622_0.840|GO:0043226_0.798|GO:0043229_0.797|GO:0016020_0.751|GO:0043227_0.682|GO:0043231_0.671|GO:0008150_0.535|GO:0043228_0.507|GO:0043232_0.505|GO:0005634_0.504
|
IPR000164+1-153_29-43_51-155_84-92_99-117_117-133_133-154+|IPR007125+50-151+|IPR009072+2-154_26-152+
|
SM00428+51-155+
|
PF00125+50-151+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000088+3-154+Histone_H3-like_centromeric_protein_CSE4
|
PTHR11426+1-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56
|
1.000
|
57-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.943
|
18451.900
|
11.481
|
25.000
|
31.677
|
6.832
|
50.311
|
49.689
|
24.224
|
7.453
|
39.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
385.124
|
326.892
|
197.334
|
354.224
|
490.394
|
522.510
|
842.035
|
342.280
|
102.426
|
454.724
|
303.739
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.958
|
— |
0.953
|
0.437
|
— |
0.700
|
-0.718
|
1.443
|
— | — | — | — | — |
No JSON data available for plots.