Hg_chrom7_TN10mRNA_14782
Organism: Heterodera glycines Gene Locus: chr7:8432099-8435300 Feature type: polypeptideProtein Sequence
Length: 498
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.378 | 0.467 | 0.986 | 0.554 | 0.971 | 1.081 | 0.669 | 0.703 | 0.848 | 1.411 | 0.365 | 1.536 | 1.618 | 0.85 | 1.68 | 1.406 | 1.02 | 0.974 | 0.618 | 0.295 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13949
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.675
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
15-35
|
1.000
|
48-97
|
0.827
|
— | — |
0.000
|
— | — |
0.564
|
0.106
|
0.012
|
0.716
|
0.076
|
0.153
|
0.110
|
0.096
|
0.069
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011663
|
1.000
|
1.000
|
Hsc_gene_12351.t1
|
Hsc_gene_12351.t1
|
— | — |
KAI1733149.1 actin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.894|GO:0110165_0.886|GO:0005622_0.808|GO:0043226_0.747|GO:0043229_0.739|GO:0008150_0.569|GO:0009987_0.511
|
IPR004000+99-496_145-493_155-493+|IPR043129+97-231_226-492+
|
SM00268+99-496+
|
PF00022+155-493+Actin
|
— |
PTHR11937+145-493+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-68
|
1.000
|
69-498
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
54498.090
|
6.607
|
0.500
|
23.293
|
9.036
|
45.582
|
54.418
|
12.048
|
11.245
|
53.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
saddlebrown
|
826.440
|
1135.346
|
774.261
|
818.198
|
1021.597
|
697.571
|
1425.697
|
657.496
|
842.666
|
534.862
|
666.778
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.782
|
-0.610
|
0.189
|
0.289
|
-0.536
|
1.042
|
— |
1.260
|
— | — | — | — | — |
No JSON data available for plots.