Hg_chrom7_TN10mRNA_14786
Organism: Heterodera glycines Gene Locus: chr7:8441078-8443659 Feature type: polypeptideProtein Sequence
Length: 538
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.21 | 1.037 | 1.014 | 0.641 | 1.115 | 1.906 | 0.863 | 0.836 | 0.826 | 0.904 | 0.451 | 1.312 | 0.929 | 1.037 | 1.29 | 1.142 | 1.066 | 0.986 | 1.144 | 0.437 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13952
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.507
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,RKRR,RRRR,KRREPRWSWANRTTTRRAR,RREPRWSWANRTTTRRARP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.869
|
0.235
|
0.070
|
0.334
|
0.076
|
0.017
|
0.037
|
0.099
|
0.088
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002448
|
3.000
|
1.000
|
Hsc_gene_12365.t1
|
— | — |
Q9VSF4.2 Probable deoxyhypusine synthase [Drosophila melanogaster]
|
KAH7697927.1 Protein DHPS-1, partial [Aphelenchus avenae]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008612
|
GO:0008150_0.868|GO:0003674_0.692|GO:0005575_0.637|GO:0110165_0.629|GO:0008152_0.617|GO:0009987_0.610|GO:0065007_0.579|GO:0050789_0.560|GO:0005622_0.554|GO:0050794_0.545|GO:0003824_0.520
|
IPR002773+316-520_353-528+|IPR029035+334-527+|IPR036982+313-537+
|
— |
PF01916+353-528+Deoxyhypusine_synthase
|
G3DSA:3.40.910.10:FF:000010+337-534+Deoxyhypusine_synthase
|
PTHR11703+316-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-94;206-304;514-538
|
2.000
|
95-205;305-513
|
6w3z_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
58739.400
|
4.930
|
-11.500
|
23.234
|
7.993
|
49.628
|
50.372
|
10.967
|
12.268
|
55.948
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
169.476
|
222.959
|
225.269
|
191.336
|
237.972
|
189.372
|
430.389
|
158.766
|
48.166
|
84.310
|
68.820
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.215
|
-0.358
|
— |
0.283
|
-0.316
|
1.194
|
-0.361
|
1.581
|
— | — | — | — |
6.670
|
No JSON data available for plots.