Hg_chrom7_TN10mRNA_14794
Organism: Heterodera glycines Gene Locus: chr7:8454369-8455534 Feature type: polypeptideProtein Sequence
Length: 140
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.997 | 0.664 | 1.039 | 1.232 | 1.905 | 0.549 | 0.425 | 1.786 | 0.635 | 1.158 | 1.407 | 2.941 | 1.19 | 0.962 | 1.02 | 0.408 | 0.82 | 0.758 | 1.648 | 1.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13959
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.363
|
0.173
|
0.032
|
0.694
|
0.114
|
0.057
|
0.105
|
0.017
|
0.118
|
0.196
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011666
|
1.000
|
1.000
|
Hsc_gene_12358.t1
|
Hsc_gene_12358.t1
|
— |
O14064.1 Protein bir1 [Schizosaccharomyces pombe 972h-]
|
KAI3421094.1 Baculoviral IAP repeat-containing protein 5 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.854|GO:0005575_0.843|GO:0110165_0.835|GO:0009987_0.735|GO:0065007_0.702|GO:0005622_0.695|GO:0050789_0.691|GO:0050794_0.675|GO:0043226_0.600|GO:0043229_0.572|GO:0016020_0.557|GO:0003674_0.534|GO:0005737_0.507
|
IPR001370+11-86_14-84_16-84_16-85+|IPR051190+7-133+
|
SM00238+11-86+
|
PF00653+16-84+Inhibitor_of_Apoptosis_domain
|
— |
PTHR46771+7-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-140
|
2rax_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
16360.830
|
6.006
|
-1.500
|
35.000
|
13.571
|
47.857
|
52.143
|
17.857
|
17.143
|
42.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1005.007
|
290.514
|
456.581
|
486.529
|
558.520
|
483.994
|
691.646
|
508.528
|
1298.975
|
2119.057
|
1767.593
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.421
|
0.607
|
0.202
|
0.167
|
-0.192
|
0.527
|
— |
0.589
|
— | — | — | — | — |
No JSON data available for plots.