Hg_chrom7_TN10mRNA_14795
Organism: Heterodera glycines Gene Locus: chr7:8456574-8461089 Feature type: polypeptideProtein Sequence
Length: 599
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.029 | 1.048 | 0.88 | 0.806 | 1.28 | 1.327 | 0.576 | 0.918 | 1.076 | 1.263 | 0.809 | 1.866 | 1.53 | 0.482 | 1.465 | 0.882 | 0.848 | 1.012 | 0.771 | 0.884 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.799
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
25-45
|
0.998
|
— | — |
0.000
|
— | — |
0.064
|
0.956
|
0.016
|
0.196
|
0.056
|
0.053
|
0.115
|
0.014
|
0.088
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011667
|
1.000
|
1.000
|
Hsc_gene_12359.t3
|
Hsc_gene_12359.t1;Hsc_gene_12359.t2;Hsc_gene_12359.t3
|
— |
O45228.2 Proline dehydrogenase 1, mitochondrial [Caenorhabditis elegans]
|
KAI6236477.1 Proline dehydrogenase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004657|GO:0005509|GO:0006562
|
GO:0005575_0.901|GO:0110165_0.901|GO:0005622_0.818|GO:0016020_0.812|GO:0005737_0.774|GO:0043226_0.767|GO:0043229_0.741|GO:0008150_0.737|GO:0043227_0.720|GO:0043231_0.696|GO:0009987_0.677|GO:0003674_0.668|GO:0005739_0.553|GO:0003824_0.544|GO:0008152_0.527|GO:0044238_0.511|GO:0044237_0.506|GO:0050896_0.501
|
IPR002048+329-364+|IPR002872+384-574+|IPR011992+286-358+|IPR015659+42-576+|IPR018247+342-354+|IPR029041+129-576+
|
— |
PF01619+384-574+Proline_dehydrogenase
|
— |
PTHR13914+42-576+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-599
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
68340.250
|
7.353
|
5.500
|
26.878
|
11.352
|
47.913
|
52.087
|
14.357
|
12.521
|
45.910
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
tan
|
1793.677
|
3410.640
|
710.763
|
1331.714
|
1853.806
|
5754.465
|
2774.703
|
2157.565
|
819.758
|
484.897
|
628.409
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.492
|
-1.494
|
1.014
|
0.446
|
1.647
|
-1.040
|
-1.527
|
0.509
|
— | — | — | — | — |
No JSON data available for plots.