Hg_chrom7_TN10mRNA_14798
Organism: Heterodera glycines Gene Locus: chr7:8474718-8479423 Feature type: polypeptideProtein Sequence
Length: 393
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.592 | 1.124 | 0.694 | 0.439 | 0.594 | 1.109 | 1.242 | 0.636 | 0.905 | 0.791 | 0.848 | 1.497 | 2.191 | 1.028 | 0.623 | 2.145 | 1.502 | 0.694 | 0.783 | 0.374 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13963
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
50-116
|
0.947
|
85-111
|
0.951
|
— | — |
0.001
|
— | — |
0.312
|
0.340
|
0.055
|
0.532
|
0.219
|
0.104
|
0.165
|
0.031
|
0.221
|
0.256
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004653
|
2.000
|
1.000
|
Hsc_gene_12362.t1
|
Hsc_gene_12362.t1
|
— |
P02517.2 Heat shock protein 26 [Drosophila melanogaster]
|
KAI1726673.1 hsp20/alpha crystallin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.894|GO:0005575_0.858|GO:0110165_0.856|GO:0009987_0.750|GO:0005622_0.728|GO:0050896_0.699|GO:0005737_0.644|GO:0003674_0.616|GO:0065007_0.604|GO:0050789_0.586|GO:0016020_0.585|GO:0006950_0.552|GO:0050794_0.546|GO:0043226_0.536|GO:0005488_0.517|GO:0043229_0.506
|
IPR001436+203-367_274-294_296-309_311-330_333-354+|IPR002068+262-371_275-368+|IPR008978+258-383_273-368+
|
— |
PF00011+275-368+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+203-367+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
106-393
|
1.000
|
1-105
|
7pe3_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
42003.920
|
8.876
|
7.500
|
17.303
|
11.450
|
50.636
|
49.364
|
9.924
|
7.379
|
59.542
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
3812.500
|
3157.561
|
6639.673
|
3116.511
|
796.398
|
2644.258
|
770.430
|
19583.609
|
704.381
|
2385.737
|
1665.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
-0.157
|
-0.983
|
-2.001
|
1.745
|
-1.768
|
2.790
|
-4.527
|
-1.858
|
2.314
|
— | — | — |
No JSON data available for plots.