Hg_chrom7_TN10mRNA_14799
Organism: Heterodera glycines Gene Locus: chr7:8475527-8479740 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.578 | 1.309 | 0.843 | 0.114 | 0.662 | 1.358 | 1.419 | 0.497 | 0.736 | 0.626 | 0.853 | 1.948 | 1.288 | 0.955 | 0.608 | 2.365 | 1.791 | 0.702 | 0.0 | 0.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13963
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.432
|
0.422
|
0.039
|
0.572
|
0.084
|
0.096
|
0.101
|
0.032
|
0.342
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004653
|
2.000
|
1.000
|
Hsc_gene_12362.t1
|
Hsc_gene_12362.t1
|
— |
P02517.2 Heat shock protein 26 [Drosophila melanogaster]
|
KAI1726673.1 hsp20/alpha crystallin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.881|GO:0005575_0.838|GO:0110165_0.832|GO:0005622_0.748|GO:0009987_0.735|GO:0050896_0.682|GO:0005737_0.646|GO:0003674_0.618|GO:0065007_0.600|GO:0050789_0.585|GO:0006950_0.554|GO:0050794_0.553|GO:0005488_0.547|GO:0016020_0.529|GO:0043226_0.525|GO:0008152_0.506|GO:0043229_0.503
|
IPR001436+111-276_183-203_205-218_220-239_242-263+|IPR002068+171-280_184-277+|IPR008978+167-292_182-277+
|
— |
PF00011+184-277+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+111-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-302
|
0.000
|
— |
7pe3_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
31337.320
|
7.280
|
1.500
|
18.212
|
6.291
|
56.623
|
43.377
|
9.603
|
8.609
|
64.570
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
3812.500
|
3157.561
|
6639.673
|
3116.511
|
796.398
|
2644.258
|
770.430
|
19583.609
|
704.381
|
2385.737
|
1665.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
-0.157
|
-0.983
|
-2.001
|
1.745
|
-1.768
|
2.790
|
-4.527
|
-1.858
|
2.314
|
— | — | — |
No JSON data available for plots.