Hg_chrom7_TN10mRNA_14801
Organism: Heterodera glycines Gene Locus: chr7:8484376-8488323 Feature type: polypeptideProtein Sequence
Length: 718
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.053 | 1.101 | 1.114 | 0.912 | 1.021 | 1.821 | 1.011 | 1.323 | 0.99 | 1.016 | 0.506 | 1.065 | 0.851 | 0.857 | 1.535 | 0.975 | 0.845 | 0.907 | 0.75 | 0.573 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13965
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.895
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,RKRR,RRRR,KKLECGGHLYRRSRHR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.805
|
0.347
|
0.032
|
0.393
|
0.118
|
0.074
|
0.056
|
0.096
|
0.136
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002448
|
3.000
|
1.000
|
Hsc_gene_12365.t1
|
Hsc_gene_12365.t1
|
— |
Q9XXJ0.1 Deoxyhypusine synthase [Caenorhabditis elegans]
|
KAH7697927.1 Protein DHPS-1, partial [Aphelenchus avenae]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008612
|
GO:0008150_0.873|GO:0003674_0.730|GO:0005575_0.646|GO:0110165_0.637|GO:0008152_0.634|GO:0009987_0.634|GO:0065007_0.564|GO:0005622_0.555|GO:0050789_0.546|GO:0050794_0.529|GO:0003824_0.525|GO:0044237_0.512
|
IPR002773+328-689_353-680_365-678+|IPR007588+109-171+|IPR029035+346-686+|IPR036982+325-688+
|
— |
PF01916+365-678+Deoxyhypusine_synthase|PF04500+109-171+FLYWCH_zinc_finger_domain
|
G3DSA:3.40.910.10:FF:000001+348-690+Probable_deoxyhypusine_synthase
|
PTHR11703+328-689+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-98;213-315;687-718
|
2.000
|
99-212;316-686
|
6w3z_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
78994.310
|
6.459
|
-0.500
|
25.766
|
8.635
|
49.582
|
50.418
|
13.510
|
12.256
|
53.482
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
811.625
|
969.391
|
811.490
|
763.125
|
944.712
|
706.834
|
1235.471
|
529.482
|
320.396
|
1075.374
|
751.812
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.486
|
-0.482
|
— |
0.276
|
-0.404
|
0.816
|
-0.524
|
1.366
|
— | — | — | — | — |
No JSON data available for plots.