SCN Proteipedia

Hg_chrom7_TN10mRNA_14804

Organism: Heterodera glycines Gene Locus: chr7:8490550-8491948 Feature type: polypeptide

Protein Sequence

Length: 328

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.886	1.489	1.275	0.526	0.915	1.485	0.436	0.61	1.491	1.03	0.647	1.076	1.948	1.29	1.182	1.045	0.8	0.831	0.704	0.807	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13968	—	—	0.889	1.000	—	1.000	1.000	1.000	1.000	—	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-Not_Clustered	0.792

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.559	0.204	0.053	0.559	0.081	0.117	0.088	0.006	0.160	0.140

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002449	3.000	1.000	Hsc_gene_2865.t1	—	—	—	WP_316829502.1 AAA domain-containing protein [Pedobacter aquatilis]	WP_090555936	inf

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.938\|GO:0005575_0.885\|GO:0110165_0.883\|GO:0009987_0.881\|GO:0003674_0.859\|GO:0065007_0.842\|GO:0005622_0.836\|GO:0050789_0.830\|GO:0050794_0.818\|GO:0008152_0.813\|GO:0016020_0.803\|GO:0044238_0.801\|GO:0043226_0.799\|GO:0005488_0.798\|GO:0044237_0.790\|GO:0009058_0.787\|GO:0043170_0.787\|GO:0043229_0.787\|GO:0050896_0.785\|GO:0044249_0.774\|GO:0009059_0.763\|GO:0032502_0.760\|GO:0048856_0.760\|GO:0043227_0.758\|GO:0032501_0.757\|GO:0019222_0.756\|GO:0006139_0.755\|GO:0010467_0.754\|GO:0005737_0.752\|GO:0051716_0.752\|GO:0043231_0.749\|GO:0048518_0.748\|GO:0060255_0.746\|GO:0071840_0.744\|GO:0031323_0.742\|GO:0016043_0.740\|GO:0034654_0.739\|GO:0007275_0.737\|GO:0048522_0.737\|GO:0090304_0.735\|GO:0048519_0.732\|GO:0009889_0.730\|GO:0141187_0.730\|GO:0016070_0.728\|GO:0031326_0.726\|GO:0010556_0.725\|GO:0010468_0.724\|GO:0032774_0.723\|GO:0006950_0.722\|GO:0048523_0.722\|GO:0007154_0.721\|GO:0023052_0.720\|GO:0003824_0.717\|GO:0048869_0.717\|GO:0007165_0.716\|GO:0030154_0.716\|GO:0051179_0.716\|GO:0097159_0.713\|GO:0048468_0.705\|GO:0009056_0.702\|GO:0051641_0.702\|GO:0006996_0.701\|GO:0010646_0.699\|GO:0033554_0.699\|GO:0003676_0.698\|GO:0022414_0.697\|GO:0048583_0.697\|GO:0009892_0.696\|GO:0023051_0.695\|GO:0010605_0.693\|GO:0009653_0.692\|GO:0009966_0.691\|GO:0031324_0.691\|GO:0044085_0.691\|GO:0009057_0.690\|GO:0033036_0.689\|GO:0019953_0.688\|GO:0070727_0.688\|GO:0003006_0.687\|GO:0008104_0.687\|GO:0009890_0.687\|GO:0010558_0.687\|GO:0031327_0.687\|GO:0022607_0.686\|GO:0035556_0.686\|GO:0016787_0.684\|GO:1902531_0.684\|GO:0007049_0.683\|GO:0022402_0.683\|GO:0003008_0.682\|GO:0009790_0.682\|GO:0043933_0.682\|GO:0080134_0.682\|GO:0006396_0.681\|GO:0048585_0.681\|GO:0048646_0.681\|GO:0007010_0.680\|GO:0009968_0.680\|GO:0010648_0.680\|GO:0023057_0.680\|GO:0048609_0.680\|GO:0065003_0.680\|GO:0010629_0.679\|GO:0016071_0.679\|GO:0051726_0.679\|GO:0006974_0.678\|GO:0007017_0.678\|GO:0007276_0.678\|GO:0010608_0.677\|GO:0000226_0.676\|GO:0007610_0.676\|GO:0010564_0.676\|GO:0022412_0.676\|GO:0034655_0.676\|GO:0045229_0.676\|GO:0141188_0.676\|GO:0003002_0.675\|GO:0006401_0.675\|GO:0007281_0.675\|GO:0007389_0.675\|GO:0022613_0.675\|GO:1902532_0.675\|GO:0006402_0.674\|GO:0021700_0.674\|GO:0050877_0.674\|GO:0007292_0.673\|GO:0045787_0.673\|GO:0000075_0.670\|GO:0000077_0.670\|GO:0000184_0.670\|GO:0000578_0.670\|GO:0000956_0.670\|GO:0007028_0.670\|GO:0007293_0.670\|GO:0007306_0.670\|GO:0007308_0.670\|GO:0007309_0.670\|GO:0007314_0.670\|GO:0007315_0.670\|GO:0007318_0.670\|GO:0007350_0.670\|GO:0007351_0.670\|GO:0007611_0.670\|GO:0007613_0.670\|GO:0007616_0.670\|GO:0008358_0.670\|GO:0008595_0.670\|GO:0009798_0.670\|GO:0009880_0.670\|GO:0009948_0.670\|GO:0009952_0.670\|GO:0009994_0.670\|GO:0010927_0.670\|GO:0010948_0.670\|GO:0016441_0.670\|GO:0022618_0.670\|GO:0031023_0.670\|GO:0031047_0.670\|GO:0031570_0.670\|GO:0032989_0.670\|GO:0034587_0.670\|GO:0035194_0.670\|GO:0035282_0.670\|GO:0042770_0.670\|GO:0044770_0.670\|GO:0045786_0.670\|GO:0046843_0.670\|GO:0048469_0.670\|GO:0048477_0.670\|GO:0048599_0.670\|GO:0050890_0.670\|GO:0070918_0.670\|GO:0070922_0.670\|GO:0071695_0.670\|GO:0071826_0.670\|GO:0080135_0.670\|GO:0090068_0.670\|GO:0140965_0.670\|GO:0140990_0.670\|GO:1901976_0.670\|GO:1901977_0.670\|GO:1901987_0.670\|GO:1901988_0.670\|GO:1901989_0.670\|GO:2000001_0.670\|GO:2000002_0.670\|GO:0003723_0.668\|GO:0140640_0.659\|GO:0016462_0.657\|GO:0016817_0.657\|GO:0016818_0.657\|GO:0140098_0.657\|GO:0017111_0.656\|GO:0071944_0.653\|GO:0003724_0.650\|GO:0004386_0.650\|GO:0008186_0.650\|GO:0016887_0.650\|GO:0032574_0.650\|GO:0034584_0.650\|GO:0061980_0.650\|GO:0140657_0.650\|GO:0043228_0.640\|GO:0005886_0.639\|GO:0043232_0.632\|GO:0005829_0.624\|GO:0030054_0.578\|GO:0031090_0.571\|GO:0042995_0.566\|GO:0099080_0.565\|GO:0098590_0.564\|GO:0045202_0.561\|GO:0120025_0.561\|GO:0005739_0.559\|GO:0031967_0.559\|GO:0098588_0.556\|GO:0043005_0.553\|GO:0005740_0.548\|GO:0031966_0.548\|GO:0036477_0.548\|GO:0044297_0.548\|GO:0030424_0.547\|GO:0030425_0.547\|GO:0035770_0.547\|GO:0036464_0.547\|GO:0097447_0.547\|GO:0043025_0.546\|GO:0097478_0.546\|GO:0098552_0.546\|GO:0019867_0.545\|GO:0031968_0.545\|GO:0005741_0.540\|GO:0019898_0.540\|GO:0031312_0.540\|GO:0031315_0.540\|GO:0032473_0.540\|GO:0043186_0.540\|GO:0045495_0.540\|GO:0060293_0.540\|GO:0070725_0.540\|GO:0098562_0.540	IPR027417+61-306_71-321+\|IPR041679+72-266+\|IPR045055+82-267+	—	PF13087+72-266+AAA_domain	—	PTHR10887+82-267+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-328	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.597	37254.090	4.954	-6.000	23.780	11.890	48.171	51.829	11.280	12.500	50.610

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	141.006	18.425	32.355	40.070	84.209	129.753	58.844	95.621	13.912	434.239	254.098

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.580	0.983	0.419	1.038	0.639	-1.128	-0.544	-0.556	-5.112	—	—	—	9.024

No JSON data available for plots.

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