Hg_chrom7_TN10mRNA_14806
Organism: Heterodera glycines Gene Locus: chr7:8495275-8498116 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.142 | 0.863 | 0.635 | 0.678 | 0.91 | 1.232 | 1.144 | 2.074 | 0.534 | 1.092 | 0.728 | 1.413 | 0.91 | 1.302 | 2.005 | 0.998 | 1.11 | 0.595 | 1.008 | 0.128 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13970
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRSR,RKRRTTAAAEGHKRNKT,KRNKTVQPFSAAFGGRRRT
|
— | — |
32-79
|
0.946
|
— | — |
0.000
|
— | — |
0.612
|
0.211
|
0.226
|
0.392
|
0.129
|
0.022
|
0.062
|
0.069
|
0.093
|
0.349
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004654
|
3.000
|
0.000
|
0.000
|
Hsc_gene_1571.t1;Hsc_gene_6521.t1
|
— |
A8VU90.1 Ankyrin repeat and LEM domain-containing protein 1 [Mus musculus]
|
KAI1717805.1 ankyrin repeat and LEM domain-containing protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004519
|
GO:0008150_0.937|GO:0009987_0.876|GO:0008152_0.786|GO:0043170_0.772|GO:0044238_0.772|GO:0006139_0.738|GO:0090304_0.723|GO:0005575_0.717|GO:0110165_0.713|GO:0003674_0.644|GO:0005622_0.594|GO:0032502_0.567|GO:0048856_0.567|GO:0050896_0.558|GO:0043226_0.549|GO:0043229_0.544|GO:0051716_0.532|GO:0005737_0.507
|
IPR034998+306-417+
|
— |
PF22945+284-418+LEM-3-like_GIY-YIG_domain
|
— |
PTHR46427+306-417+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-151;193-269
|
2.000
|
152-192;270-458
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
50178.800
|
10.961
|
35.500
|
27.729
|
9.170
|
50.000
|
50.000
|
18.777
|
8.952
|
53.057
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
131.381
|
33.247
|
49.480
|
62.036
|
86.485
|
97.036
|
135.186
|
51.106
|
4.466
|
378.478
|
218.187
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.764
|
0.435
|
0.449
|
— |
0.488
|
-1.030
|
1.546
|
-6.529
|
3.982
|
— | — | — |
No JSON data available for plots.