SCN Proteipedia

Hg_chrom7_TN10mRNA_14810

Organism: Heterodera glycines Gene Locus: chr7:8691104-8697334 Feature type: polypeptide

Protein Sequence

Length: 727

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.152	0.864	0.725	0.806	0.825	2.151	0.77	1.444	0.734	1.227	0.521	0.728	0.726	1.376	1.432	1.493	0.902	0.813	0.423	0.485	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13974	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.959

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	16-53	0.851	44-84	0.998	—	—	0.000	—	—	0.270	0.297	0.013	0.664	0.147	0.220	0.186	0.095	0.216	0.110

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004655	1.000	2.000	Hsc_gene_12405.t1;Hsc_gene_12405.t2	—	—	Q95YE2.5 Endoribonuclease rege-1 [Caenorhabditis elegans]	KAH7710754.1 n4bp1-pending-prov protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046872	GO:0008150_0.958\|GO:0009987_0.920\|GO:0065007_0.914\|GO:0050789_0.903\|GO:0050794_0.814\|GO:0048519_0.783\|GO:0005575_0.757\|GO:0110165_0.752\|GO:0048523_0.693\|GO:0005622_0.680\|GO:0016020_0.667\|GO:0043226_0.632\|GO:0032501_0.631\|GO:0008152_0.611\|GO:0043170_0.611\|GO:0043229_0.609\|GO:0019222_0.608\|GO:0044238_0.602\|GO:0031323_0.601\|GO:0044237_0.601\|GO:0060255_0.599\|GO:0009058_0.597\|GO:0080090_0.595\|GO:0009059_0.586\|GO:0044249_0.586\|GO:0010467_0.583\|GO:0009889_0.579\|GO:0010468_0.579\|GO:0010556_0.579\|GO:0031326_0.579\|GO:0043227_0.577\|GO:0003674_0.569\|GO:0050896_0.567\|GO:0043231_0.564\|GO:0005737_0.552\|GO:0051716_0.547\|GO:0005488_0.539\|GO:0048518_0.531\|GO:0005634_0.526\|GO:0051239_0.526\|GO:0009892_0.525\|GO:0031324_0.521\|GO:0010605_0.515\|GO:0009890_0.507\|GO:0010558_0.507\|GO:0031327_0.507\|GO:0009056_0.501	IPR000571+395-420+\|IPR021869+232-387+\|IPR040546+156-196+\|IPR040757+666-705+\|IPR051101+83-705+	—	PF11977+232-387+Zc3h12a-like_Ribonuclease_NYN_domain\|PF18039+156-196+UBA-like_domain\|PF18561+666-705+Endoribonuclease_Regnase_1/_ZC3H12_C-terminal_domain	G3DSA:3.40.50.11980:FF:000001+231-392+ZC3H12A_isoform_1	PTHR12876+83-705+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-46;121-238;448-618;701-727	3.000	47-120;239-447;619-700	5h9w_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.904	78945.660	8.621	21.500	22.283	7.703	50.344	49.656	13.343	8.941	54.883

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	tan	1794.337	735.171	1001.632	653.550	641.653	1976.818	404.848	1084.933	7079.543	103.590	3093.284

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.219	-0.307	-0.509	—	1.638	-2.279	-0.966	-1.284	—	—	—	—	—

No JSON data available for plots.

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