Hg_chrom7_TN10mRNA_14811
Organism: Heterodera glycines Gene Locus: chr7:8701029-8703010 Feature type: polypeptideProtein Sequence
Length: 220
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 0.846 | 0.992 | 0.784 | 1.061 | 1.282 | 0.812 | 1.364 | 0.606 | 0.799 | 1.309 | 0.802 | 1.389 | 1.224 | 0.835 | 0.974 | 1.043 | 1.309 | 1.399 | 1.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13975
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKQTIVPDVVTKAPEKRAK
|
— | — |
15-38
|
0.990
|
— | — |
0.000
|
— | — |
0.145
|
0.910
|
0.185
|
0.314
|
0.041
|
0.073
|
0.159
|
0.030
|
0.076
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011673
|
1.000
|
1.000
|
Hsc_gene_12406.t1
|
Hsc_gene_12406.t1
|
— |
O16264.1 Phosphatidylethanolamine-binding protein homolog F40A3.3 [Caenorhabditis elegans]
|
EPB70117.1 phosphatidylethanolamine-binding protein [Ancylostoma ceylanicum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.781|GO:0110165_0.775|GO:0005622_0.633|GO:0008150_0.620|GO:0016020_0.609|GO:0043226_0.600|GO:0043227_0.581|GO:0005737_0.576|GO:0043229_0.569|GO:0043231_0.536
|
IPR001858+97-119+|IPR008914+81-202+|IPR035810+39-206_61-205+|IPR036610+34-220_39-219+
|
— |
PF01161+81-202+Phosphatidylethanolamine-binding_protein
|
G3DSA:3.90.280.10:FF:000006+34-220+protein_D3
|
PTHR11362+39-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-220
|
5tvd_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
24736.990
|
8.041
|
5.000
|
27.273
|
13.182
|
49.091
|
50.909
|
15.455
|
11.818
|
52.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1884.829
|
1602.894
|
1772.177
|
2202.252
|
2643.645
|
2269.711
|
1924.176
|
1318.534
|
1775.819
|
1764.242
|
1769.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.321
|
0.422
|
0.232
|
-0.205
|
-0.228
|
-0.887
|
0.688
|
— | — | — | — | — |
No JSON data available for plots.