Hg_chrom7_TN10mRNA_14812
Organism: Heterodera glycines Gene Locus: chr7:8703252-8705813 Feature type: polypeptideProtein Sequence
Length: 220
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 0.529 | 1.24 | 0.157 | 1.515 | 0.699 | 0.812 | 2.273 | 1.212 | 0.921 | 0.758 | 1.07 | 1.389 | 1.224 | 1.299 | 0.844 | 0.447 | 1.446 | 1.748 | 1.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13976
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.417
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.112
|
— | — |
0.293
|
0.592
|
0.369
|
0.207
|
0.737
|
0.051
|
0.258
|
0.180
|
0.047
|
0.251
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011674
|
1.000
|
1.000
|
Hsc_gene_12407.t1
|
Hsc_gene_12407.t1
|
— | — |
KAI1729637.1 hemimethylated DNA-binding protein yccV like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
— |
IPR011722+112-210_113-205_113-208+|IPR036623+112-213_113-204+|IPR053189+93-220+
|
SM00992+112-210+
|
PF08755+113-205+Hemimethylated_DNA-binding_protein_YccV_like
|
— |
PTHR48351+93-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-220
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
25479.780
|
5.551
|
-5.000
|
31.818
|
16.818
|
45.455
|
54.545
|
15.909
|
15.909
|
45.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
paleturquoise
|
948.258
|
622.983
|
855.431
|
662.517
|
805.326
|
1087.490
|
1500.635
|
1217.962
|
1237.665
|
688.251
|
923.714
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.228
|
— |
-0.260
|
0.250
|
0.448
|
0.474
|
— |
0.444
|
— | — | — | — | — |
No JSON data available for plots.