Hg_chrom7_TN10mRNA_14816
Organism: Heterodera glycines Gene Locus: chr7:8716123-8721414 Feature type: polypeptideProtein Sequence
Length: 504
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.292 | 0.877 | 1.154 | 0.684 | 0.595 | 1.781 | 0.614 | 1.29 | 0.485 | 0.831 | 0.361 | 1.284 | 0.882 | 1.564 | 1.296 | 1.531 | 1.366 | 0.932 | 1.374 | 0.292 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13980
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RKKK
|
29-49
|
0.989
|
27-65
|
0.986
|
— | — |
0.000
|
— | — |
0.343
|
0.322
|
0.033
|
0.352
|
0.391
|
0.281
|
0.238
|
0.052
|
0.386
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011678
|
1.000
|
1.000
|
Hsc_gene_12413.t1
|
Hsc_gene_12413.t1
|
— | — |
KAI3421031.1 hypothetical protein GPALN_014658 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-404
|
1.000
|
405-504
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
54537.520
|
6.556
|
0.500
|
21.230
|
8.532
|
50.992
|
49.008
|
11.310
|
9.921
|
61.706
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightyellow
|
1252.688
|
418.473
|
585.543
|
244.371
|
415.286
|
415.545
|
145.119
|
247.103
|
13.078
|
4543.914
|
2602.127
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.256
|
-0.913
|
-1.153
|
0.734
|
— |
-1.510
|
-0.854
|
-0.629
|
-8.582
|
— |
-3.053
|
— | — |
No JSON data available for plots.