SCN Proteipedia

Hg_chrom7_TN10mRNA_14817

Organism: Heterodera glycines Gene Locus: chr7:8721484-8729039 Feature type: polypeptide

Protein Sequence

Length: 1,056

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.002	0.969	0.792	0.751	0.947	1.117	0.868	1.515	0.842	1.28	0.89	1.56	0.737	1.093	1.218	1.393	0.978	0.875	0.51	0.613	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13981	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	QQKERKKRKKSKST,RRKNPLLNSTRRMKC,RRMKCLAAKAARSKRS	—	—	—	—	—	—	0.000	—	—	0.344	0.229	0.012	0.721	0.127	0.409	0.258	0.134	0.346	0.070

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004656	1.000	2.000	Hsc_gene_12414.t1;Hsc_gene_12414.t2	Hsc_gene_12414.t1;Hsc_gene_12414.t2	—	Q8TD19.2 Serine/threonine-protein kinase Nek9 [Homo sapiens]	KAH7720233.1 Protein NEKL-1 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.891\|GO:0005575_0.795\|GO:0110165_0.785\|GO:0009987_0.761\|GO:0065007_0.681\|GO:0050789_0.672\|GO:0003674_0.670\|GO:0005622_0.660\|GO:0050794_0.618\|GO:0003824_0.586\|GO:0140096_0.586\|GO:0016020_0.557\|GO:0016740_0.555\|GO:0004672_0.531\|GO:0016301_0.531\|GO:0016772_0.531\|GO:0016773_0.531\|GO:0071840_0.519\|GO:0016043_0.518\|GO:0043226_0.504	IPR000408+384-435_385-431_386-402_434-486_473-489_486-535_487-538_489-503_602-620_662-683+\|IPR000719+53-308_53-316+\|IPR008271+174-186+\|IPR009091+325-568_361-677_569-739+\|IPR011009+53-337+\|IPR017441+59-82+\|IPR051997+48-746+	SM00220+53-316+	PF00069+53-308+Protein_kinase_domain\|PF00415+385-431_486-535+Regulator_of_chromosome_condensation_(RCC1)_repeat	G3DSA:3.30.200.20:FF:000097+49-131+Probable_serine/threonine-protein_kinase_nek1	PTHR44535+48-746+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5;671-1056	1.000	6-670	4b9d_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.898	115124.870	8.876	35.000	24.905	8.428	49.148	50.852	14.867	10.038	53.788

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	544.974	1048.824	604.114	328.094	113.871	53.422	86.122	155.438	40.582	1457.617	850.316

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.026	-1.814	-0.771	-1.556	-1.079	0.701	1.441	-0.710	-5.287	—	-3.366	—	—

No JSON data available for plots.

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