Hg_chrom7_TN10mRNA_14820
Organism: Heterodera glycines Gene Locus: chr7:8736074-8749885 Feature type: polypeptideProtein Sequence
Length: 1,584
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.991 | 1.013 | 1.033 | 0.893 | 0.936 | 1.295 | 0.774 | 1.673 | 0.842 | 1.433 | 0.363 | 1.783 | 1.298 | 1.275 | 1.714 | 0.929 | 0.766 | 0.727 | 0.826 | 0.52 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13984
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.804
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RRVQDVDLFLLGLAERPRR,RKAIELGLERMLERRKRET
|
— | — | — | — |
1-23
|
0.891
|
1.000
|
0.000
|
0.000
|
0.187
|
0.138
|
0.235
|
0.263
|
0.073
|
0.077
|
0.111
|
0.077
|
0.545
|
0.839
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002450
|
2.000
|
2.000
|
Hsc_gene_12419.t1;Hsc_gene_12419.t2
|
Hsc_gene_12419.t1;Hsc_gene_12419.t2
|
— |
Q7QH73.3 Chorion peroxidase [Anopheles gambiae]
|
KAI1706920.1 heme peroxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979|GO:0020037
|
GO:0008150_0.887|GO:0009987_0.834|GO:0005575_0.788|GO:0110165_0.780|GO:0003674_0.713|GO:0050896_0.625|GO:0003824_0.566|GO:0051716_0.560|GO:0008152_0.536|GO:0044237_0.504
|
IPR010255+152-763_928-1505+|IPR019791+149-765_158-734_925-1507_934-1479_958-969_1005-1020_1150-1168_1168-1188_1193-1219_1253-1263_1381-1401_1455-1469+|IPR037120+140-766_919-1508+|IPR050702+777-1505+
|
— |
PF03098+158-734_934-1479+Animal_haem_peroxidase
|
G3DSA:1.10.640.10:FF:000003+142-764+chorion_peroxidase|G3DSA:1.10.640.10:FF:000006+920-1507+Double_oxidase:_two_peroxidase_domains
|
PTHR11475+777-1505+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
844-892
|
2.000
|
1-843;893-1584
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
177508.960
|
7.138
|
18.500
|
25.442
|
10.859
|
46.023
|
53.977
|
14.141
|
11.301
|
50.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
57.846
|
47.173
|
60.889
|
36.938
|
46.025
|
96.298
|
106.133
|
112.388
|
36.939
|
35.682
|
36.221
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.491
|
-0.610
|
— |
1.081
|
— | — | — | — | — | — | — | — |