SCN Proteipedia

Hg_chrom7_TN10mRNA_14821

Organism: Heterodera glycines Gene Locus: chr7:8749894-8753235 Feature type: polypeptide

Protein Sequence

Length: 346

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.773	0.807	0.525	0.897	0.674	0.815	1.273	0.723	1.541	1.836	0.307	2.21	1.846	0.889	0.826	1.073	0.569	0.788	1.334	1.615	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13985	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.868

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole	—	—	—	—	—	—	—	—	0.002	—	—	0.065	0.260	0.055	0.078	0.486	0.733	0.555	0.089	0.363	0.062

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004658	2.000	1.000	Hsc_gene_12420.t1	Hsc_gene_12420.t1	—	Q95XZ6.2 Lysosomal amino acid transporter 1 [Caenorhabditis elegans]	KAH7724691.1 PQ loop repeat family protein [Aphelenchus avenae]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.951\|GO:0005575_0.895\|GO:0009987_0.893\|GO:0110165_0.892\|GO:0003674_0.866\|GO:0016020_0.861\|GO:0006810_0.836\|GO:0051179_0.836\|GO:0051234_0.836\|GO:0055085_0.792\|GO:0005622_0.765\|GO:0005737_0.765\|GO:0005215_0.742\|GO:0022857_0.742\|GO:0043226_0.730\|GO:0043227_0.716\|GO:0005773_0.710\|GO:0043229_0.710\|GO:0043231_0.710\|GO:0006865_0.688\|GO:0003333_0.687\|GO:0015802_0.670\|GO:1990822_0.670\|GO:0015171_0.660\|GO:0071705_0.656\|GO:0015174_0.650\|GO:0031090_0.647\|GO:0015711_0.627\|GO:0015849_0.617\|GO:0046942_0.617\|GO:1903825_0.615\|GO:1905039_0.614\|GO:0015695_0.605\|GO:0015807_0.600\|GO:0098588_0.600\|GO:1902475_0.600\|GO:0008514_0.596\|GO:0005342_0.590\|GO:0046943_0.590\|GO:0015101_0.581\|GO:0015179_0.581\|GO:0000323_0.571\|GO:0005774_0.561\|GO:0098852_0.555	IPR006603+69-126_81-112_228-285_241-272+\|IPR051415+43-315+	SM00679+81-112_241-272+	PF04193+69-126_228-285+PQ_loop_repeat	G3DSA:1.20.1280.290:FF:000009+68-158+PQ_loop_repeat_family_protein	PTHR16201+43-315+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-346	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.769	38356.790	6.323	-0.500	14.451	15.318	32.081	67.919	7.514	6.936	47.110

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	519.502	334.430	348.396	390.345	403.743	566.682	946.334	640.402	912.603	226.993	520.826

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.169	—	0.272	—	0.504	0.751	—	0.706	—	—	—	—	—

No JSON data available for plots.

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