SCN Proteipedia

Hg_chrom7_TN10mRNA_14827

Organism: Heterodera glycines Gene Locus: chr7:8766259-8772053 Feature type: polypeptide

Protein Sequence

Length: 916

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.685	1.168	0.992	0.452	0.928	0.98	0.572	1.801	0.97	1.372	0.811	1.349	1.729	1.428	1.337	0.936	1.02	0.91	0.42	0.835	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13991	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.630

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	RKRHSTMRQAFDSARRMRA,KRHSTMRQAFDSARRMRAK	—	—	—	—	—	—	0.000	—	—	0.499	0.764	0.012	0.254	0.062	0.100	0.086	0.018	0.044	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011685	1.000	1.000	Hsc_gene_12426.t1	Hsc_gene_12426.t1	—	O44476.2 Zinc phosphodiesterase ELAC protein 2 homolog [Caenorhabditis elegans]	KHN77285.1 Ribonuclease Z [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008033\|GO:0042781	GO:0008150_0.799\|GO:0005575_0.772\|GO:0003674_0.767\|GO:0110165_0.766\|GO:0009987_0.754\|GO:0005622_0.718\|GO:0016020_0.698\|GO:0043226_0.674\|GO:0008152_0.661\|GO:0043229_0.658\|GO:0044238_0.649\|GO:0044237_0.639\|GO:0009058_0.632\|GO:0043170_0.631\|GO:0043227_0.623\|GO:0043231_0.615\|GO:0044249_0.610\|GO:0009059_0.599\|GO:0006139_0.586\|GO:0003824_0.583\|GO:0010467_0.583\|GO:0090304_0.574\|GO:0034654_0.573\|GO:0005737_0.565\|GO:0016070_0.562\|GO:0141187_0.562\|GO:0032774_0.557\|GO:0016787_0.536\|GO:0006396_0.520\|GO:0006399_0.511\|GO:0008033_0.511\|GO:0016788_0.511\|GO:0031123_0.511\|GO:0042780_0.511\|GO:0140640_0.504\|GO:0004518_0.501\|GO:0140098_0.501	IPR001279+586-832_600-659_745-833+\|IPR027794+127-180+\|IPR036866+121-371_130-360_570-849_570-868+\|IPR047151+116-902+	SM00849+586-832+	PF12706+600-659_745-833+Beta-lactamase_superfamily_domain\|PF13691+127-180+tRNase_Z_endonuclease	—	PTHR12553+116-902+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	257-307;895-916	2.000	1-256;308-894	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.792	104266.190	8.554	24.500	26.528	13.210	48.144	51.856	15.502	11.026	48.690

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	1586.943	986.168	964.505	2296.524	2547.844	1765.078	3088.433	758.263	851.009	1652.063	1308.755

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.262	1.082	1.361	0.118	-0.515	0.818	-1.325	2.170	—	—	—	—	—

No JSON data available for plots.

Back to Browser