Hg_chrom7_TN10mRNA_14831
Organism: Heterodera glycines Gene Locus: chr7:8792192-8798353 Feature type: polypeptideProtein Sequence
Length: 1,085
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.018 | 1.179 | 1.123 | 0.572 | 1.229 | 1.182 | 0.527 | 1.152 | 0.819 | 1.457 | 0.698 | 0.759 | 1.075 | 0.975 | 1.223 | 1.29 | 0.982 | 0.852 | 0.638 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13995
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.460
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.255
|
0.136
|
0.022
|
0.692
|
0.150
|
0.524
|
0.337
|
0.074
|
0.232
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004659
|
1.000
|
2.000
|
Hsc_gene_12433.t1;Hsc_gene_12433.t2
|
Hsc_gene_12433.t1;Hsc_gene_12433.t2
|
— |
Q9UPU7.2 TBC1 domain family member 2B [Homo sapiens]
|
KAI1708405.1 rab-GTPase-TBC domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.921|GO:0110165_0.919|GO:0008150_0.844|GO:0005622_0.781|GO:0009987_0.701|GO:0016020_0.654|GO:0005737_0.640|GO:0065007_0.573|GO:0071944_0.538|GO:0051179_0.525|GO:0005886_0.524|GO:0043226_0.511
|
IPR000195+799-1029_802-1006_806-1026+|IPR001849+14-111_15-113_17-109+|IPR011993+17-116+|IPR035969+777-966_946-1061+|IPR050302+546-1042+
|
SM00164+799-1029+|SM00233+15-113+
|
PF00169+17-109+PH_domain|PF00566+806-1026+Rab-GTPase-TBC_domain
|
G3DSA:1.10.8.270:FF:000026+823-937+TBC_(Tre-2/Bub2/Cdc16)_domain_family
|
PTHR47219+546-1042+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;105-180;326-466;600-718
|
4.000
|
6-104;181-325;467-599;719-1085
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
121089.850
|
5.242
|
-19.500
|
26.452
|
9.862
|
51.152
|
48.848
|
12.903
|
13.548
|
51.797
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
931.952
|
1215.603
|
806.090
|
908.028
|
954.186
|
1032.514
|
2424.243
|
800.146
|
607.083
|
569.174
|
585.421
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.822
|
-0.558
|
0.280
|
— | — |
1.241
|
-0.474
|
1.742
|
— | — | — | — | — |
No JSON data available for plots.