Hg_chrom7_TN10mRNA_14832
Organism: Heterodera glycines Gene Locus: chr7:8798371-8803913 Feature type: polypeptideProtein Sequence
Length: 518
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.122 | 1.347 | 0.491 | 0.2 | 1.737 | 1.436 | 0.598 | 1.544 | 0.601 | 1.017 | 0.936 | 1.249 | 1.233 | 1.077 | 1.537 | 1.407 | 0.728 | 0.614 | 0.743 | 0.511 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13996
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RVEKRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.284
|
0.229
|
0.047
|
0.708
|
0.118
|
0.246
|
0.295
|
0.024
|
0.486
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011689
|
1.000
|
1.000
|
Hsc_gene_12434.t1
|
Hsc_gene_12434.t1
|
— |
Q18312.2 Regulator of G-protein signaling rgs-3 [Caenorhabditis elegans]
|
KAH7724681.1 RGS-3 protein [Aphelenchus avenae]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.933|GO:0005575_0.811|GO:0110165_0.784|GO:0050896_0.780|GO:0009987_0.755|GO:0065007_0.731|GO:0050789_0.721|GO:0050794_0.709|GO:0016020_0.666|GO:0005622_0.622|GO:0051716_0.622|GO:0003674_0.613|GO:0023052_0.581|GO:0007154_0.580|GO:0007165_0.572|GO:0005488_0.558|GO:0005515_0.518
|
IPR016137+267-380_269-378_392-413_395-513_395-514_414-432_444-467_488-507+|IPR036305+266-380_387-516+|IPR044926+246-384_385-517+
|
SM00315+267-380_395-514+
|
PF00615+269-378_395-513+Regulator_of_G_protein_signaling_domain
|
— |
PTHR10845+102-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-267
|
1.000
|
268-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
58364.100
|
8.615
|
11.000
|
29.923
|
10.232
|
55.598
|
44.402
|
16.795
|
13.127
|
47.683
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
576.735
|
507.061
|
1099.248
|
424.267
|
114.349
|
108.933
|
120.659
|
855.783
|
108.640
|
1230.371
|
749.629
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.888
|
-0.395
|
-1.265
|
-1.923
|
— | — |
2.875
|
-2.687
|
-3.610
|
— | — | — | — |
No JSON data available for plots.