Hg_chrom7_TN10mRNA_14835
Organism: Heterodera glycines Gene Locus: chr7:8826352-8828423 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 1.199 | 0.675 | 0.071 | 0.859 | 1.639 | 0.81 | 0.825 | 0.916 | 0.808 | 0.687 | 0.97 | 1.489 | 1.983 | 1.22 | 1.502 | 1.217 | 0.843 | 0.793 | 0.424 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13999
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.868
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKLLHARRKKR
|
— | — |
32-54
|
0.993
|
— | — |
0.000
|
— | — |
0.766
|
0.073
|
0.006
|
0.492
|
0.096
|
0.056
|
0.038
|
0.067
|
0.098
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011691
|
1.000
|
1.000
|
Hsc_gene_12440.t1
|
Hsc_gene_12440.t1
|
— | — |
KAH7720222.1 immunoglobulin I-set domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.914|GO:0110165_0.913|GO:0008150_0.816|GO:0009987_0.695|GO:0016020_0.668|GO:0065007_0.654|GO:0050789_0.642|GO:0050794_0.632|GO:0003674_0.622|GO:0032501_0.591|GO:0005622_0.560|GO:0032502_0.530|GO:0048856_0.530|GO:0071944_0.512|GO:0007275_0.508|GO:0005488_0.501
|
IPR003961+276-356_277-356_278-366+|IPR013783+275-365+|IPR036116+276-372+
|
SM00060+276-356+
|
PF00041+277-356+Fibronectin_type_III_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-185;251-485
|
1.000
|
186-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
53098.500
|
9.984
|
12.000
|
21.031
|
9.485
|
50.515
|
49.485
|
12.165
|
8.866
|
56.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
1198.023
|
1072.712
|
939.668
|
1125.430
|
1300.200
|
1035.188
|
2004.778
|
1197.226
|
338.463
|
1734.301
|
1136.085
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.420
|
— |
0.369
|
0.176
|
-0.314
|
0.964
|
— |
0.884
|
-2.481
|
— | — | — | — |
No JSON data available for plots.