Hg_chrom7_TN10mRNA_14836
Organism: Heterodera glycines Gene Locus: chr7:8828996-8832994 Feature type: polypeptideProtein Sequence
Length: 604
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 0.963 | 0.933 | 0.628 | 1.159 | 1.019 | 1.045 | 1.49 | 1.104 | 0.94 | 0.452 | 1.169 | 1.242 | 1.083 | 1.994 | 1.395 | 0.923 | 0.677 | 0.764 | 0.682 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14000
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.657
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRRR,PWRKRKM,RRRTFGCIRFRPRRS
|
— | — | — | — | — | — |
0.030
|
— | — |
0.124
|
0.177
|
0.040
|
0.181
|
0.043
|
0.032
|
0.158
|
0.151
|
0.182
|
0.936
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004661
|
2.000
|
1.000
|
Hsc_gene_12441.t1
|
Hsc_gene_12441.t1
|
— |
Q9U3S9.2 Zinc metalloproteinase nas-6 [Caenorhabditis elegans]
|
KAI6188790.1 Metalloendopeptidase [Aphelenchoides besseyi];KAI6202367.1 Metalloendopeptidase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.752|GO:0005575_0.635|GO:0110165_0.633|GO:0003674_0.602|GO:0032501_0.514
|
IPR001506+174-402_183-254_270-402_290-308_309-326_348-363_387-400+|IPR003582+543-579_544-578+|IPR006026+179-353+|IPR024079+136-403+|IPR034035+185-399+
|
SM00235+179-353+|SM00254+543-579+
|
PF01400+183-254_270-402+Astacin_(Peptidase_family_M12A)|PF01549+544-578+ShK_domain-like
|
G3DSA:1.10.10.1940:FF:000002+536-579+PHAryngeal_gland_Toxin-related
|
PTHR10127+147-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
42-130;412-543;580-604
|
3.000
|
1-41;131-411;544-579
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
67437.390
|
8.148
|
13.000
|
27.815
|
10.762
|
51.325
|
48.675
|
15.728
|
12.086
|
51.656
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
49.472
|
31.439
|
16.089
|
16.411
|
47.255
|
67.116
|
57.706
|
36.263
|
7.602
|
108.637
|
65.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.193
|
-1.074
|
— |
1.494
|
0.522
|
— |
-1.003
|
0.817
|
— | — | — | — | — |
No JSON data available for plots.