Hg_chrom7_TN10mRNA_14837
Organism: Heterodera glycines Gene Locus: chr7:8828996-8832994 Feature type: polypeptideProtein Sequence
Length: 573
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.71 | 1.015 | 0.984 | 0.602 | 1.222 | 0.94 | 1.08 | 1.483 | 1.047 | 0.943 | 0.45 | 1.232 | 1.212 | 1.007 | 2.03 | 1.371 | 0.944 | 0.661 | 0.805 | 0.667 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14000
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.657
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KRRR,PWRKRKM,RRRTFGCIRFRPRRS
|
— | — | — | — | — | — |
0.030
|
— | — |
0.144
|
0.180
|
0.050
|
0.152
|
0.049
|
0.024
|
0.130
|
0.150
|
0.201
|
0.932
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004661
|
2.000
|
1.000
|
Hsc_gene_12441.t1
|
Hsc_gene_12441.t1
|
— |
Q9U3S9.2 Zinc metalloproteinase nas-6 [Caenorhabditis elegans]
|
KAI6188790.1 Metalloendopeptidase [Aphelenchoides besseyi];KAI6202367.1 Metalloendopeptidase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.752|GO:0005575_0.635|GO:0110165_0.635|GO:0003674_0.608|GO:0032501_0.513
|
IPR001506+174-371_183-371_259-277_278-295_317-332_356-369+|IPR003582+512-548_513-547+|IPR006026+179-322+|IPR024079+136-372+|IPR034035+185-368+
|
SM00235+179-322+|SM00254+512-548+
|
PF01400+183-371+Astacin_(Peptidase_family_M12A)|PF01549+513-547+ShK_domain-like
|
G3DSA:1.10.10.1940:FF:000002+505-548+PHAryngeal_gland_Toxin-related|G3DSA:3.40.390.10:FF:000015+136-373+Meprin_A_subunit
|
PTHR10127+147-421+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
42-130;381-512;549-573
|
3.000
|
1-41;131-380;513-548
|
3lqb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
64042.400
|
7.696
|
9.500
|
28.621
|
10.646
|
52.007
|
47.993
|
15.881
|
12.740
|
51.658
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
49.472
|
31.439
|
16.089
|
16.411
|
47.255
|
67.116
|
57.706
|
36.263
|
7.602
|
108.637
|
65.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.193
|
-1.074
|
— |
1.494
|
0.522
|
— |
-1.003
|
0.817
|
— | — | — | — | — |
No JSON data available for plots.