Hg_chrom7_TN10mRNA_14840
Organism: Heterodera glycines Gene Locus: chr7:8842566-8843055 Feature type: polypeptideProtein Sequence
Length: 106
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.439 | 0.439 | 0.172 | 1.627 | 0.629 | 1.935 | 1.011 | 1.887 | 0.839 | 0.255 | 3.145 | 1.11 | 1.31 | 0.544 | 2.31 | 0.27 | 1.083 | 1.001 | 0.0 | 0.832 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_14003
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRCKHFELGGQKKSRG,KKGKESTFAQGRRRYDRK,KKCRKHTNHKVTQYKKGKE,KGKESTFAQGRRRYDRKQKGYGGQTKPIFRKKAKTTKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.634
|
0.158
|
0.104
|
0.553
|
0.177
|
0.066
|
0.107
|
0.011
|
0.053
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011694
|
1.000
|
1.000
|
Hsc_gene_12445.t1
|
Hsc_gene_12445.t1
|
C09H10.2
|
P48166.2 Large ribosomal subunit protein eL42 [Caenorhabditis elegans]
|
KAI3420992.1 Ribosomal protein L44 [Globodera pallida]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.888|GO:0110165_0.884|GO:0005622_0.844|GO:0043226_0.774|GO:0043229_0.766|GO:0005737_0.690|GO:0043228_0.604|GO:0043232_0.604|GO:0005840_0.569|GO:0032991_0.551|GO:1990904_0.539|GO:0044391_0.535|GO:0003674_0.532|GO:0008150_0.527|GO:0005829_0.508|GO:0022626_0.506
|
IPR000552+1-106_2-94_19-94_63-74+|IPR011332+2-94+|IPR053708+1-106+
|
— |
PF00935+19-94+Ribosomal_protein_L44
|
G3DSA:3.10.450.80:FF:000001+1-106+60S_ribosomal_protein_L44
|
PTHR10369+1-106+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-61
|
1.000
|
62-106
|
9cai_Co
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
12492.860
|
11.574
|
31.000
|
40.566
|
11.321
|
58.491
|
41.509
|
35.849
|
4.717
|
37.736
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
8937.540
|
4862.520
|
7132.095
|
11450.265
|
11428.748
|
10115.461
|
5392.455
|
4054.154
|
9362.150
|
11666.739
|
10679.058
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.323
|
1.099
|
0.792
|
— | — |
-0.896
|
-1.425
|
0.556
|
— | — | — | — | — |
No JSON data available for plots.